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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGAGACACTCTGGAGTTGGCGCCGCCGTTGAATACGCAGTTGTACATCTCAAGgtacatgaacaaaatatacctatttttaaggatagacacttagattgaattaataaataagcaaactttgttagtattcttataagttatcacttatcag...

Basic information

species Arabidopsis thaliana
transcript AT1G70410.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125029490|gb|EL101759.1|EL101759
EST:     CAGTTGTACATCTCAAG                         GTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
genomic: CAGTTGTACATCTCAAGgtacatgaac ... ttatttgtagGTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
EST: gi|124723103|gb|EH814505.1|EH814505
EST:     CGCCGCCGTTGAATACGCAGTTGTACATCTCAAG                         GTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
genomic: CGCCGCCGTTGAATACGCAGTTGTACATCTCAAGgtacatgaac ... ttatttgtagGTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
EST: gi|125240162|gb|EL254247.1|EL254247
EST:     GTTGAATACGCAGTTGTACATCTCAAG                         GTGGAGAGCATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
genomic: GTTGAATACGCAGTTGTACATCTCAAGgtacatgaac ... ttatttgtagGTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
EST: gi|86078926|gb|DR374683.1|DR374683
EST:     ACGCAGTTGTACATCTCAAG                         GTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
genomic: ACGCAGTTGTACATCTCAAGgtacatgaac ... ttatttgtagGTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
EST: gi|125211024|gb|EL225978.1|EL225978
EST:     CGCCGCCGTTGAATACGCAGTTGTACATCTCAAG                         GTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA
genomic: CGCCGCCGTTGAATACGCAGTTGTACATCTCAAGgtacatgaac ... ttatttgtagGTGGAGAACATTTTGGTGATAGGCCATAGCTGCTGTGGTGGTATTAAGGGA