1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTTATTTCTGTCATGTCTATGTGGACTCGTGTACAACCTGCATATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAGgtacaatatccagtttctattgttcttcagattaggacgtacaggctaactaataagtttccgttgtacag
species | Arabidopsis thaliana |
transcript | AT1G70160.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAG GATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCAEST: gi|116428911|gb|EG471503.1|EG471503
genomic: ATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAGgtacaatatc ... cgttgtacagGATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCA
EST: ATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAG GATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCAEST: gi|86063791|gb|DR359548.1|DR359548
genomic: ATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAGgtacaatatc ... cgttgtacagGATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCA
EST: ATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAG GATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCAEST: gi|47828742|gb|CK118426.1|CK118426
genomic: ATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAGgtacaatatc ... cgttgtacagGATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCA
EST: GGAACGAGGCACTTAATAAACGACTCGGTACTGAG GATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCAEST: gi|116428910|gb|EG471502.1|EG471502
genomic: GGAACGAGGCACTTAATAAACGACTCGGTACTGAGgtacaatatc ... cgttgtacagGATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCA
EST: ATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAG GATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCAEST: gi|164041892|gb|ES150130.1|ES150130
genomic: ATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAGgtacaatatc ... cgttgtacagGATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCA
EST: ATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAG GATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCEST: gi|47831564|gb|CK121248.1|CK121248
genomic: ATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAGgtacaatatc ... cgttgtacagGATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTC
EST: ATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAG GATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCAEST: gi|125062932|gb|EL131101.1|EL131101
genomic: ATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAGgtacaatatc ... cgttgtacagGATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCA
EST: TCGGTACTGAG GATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCA
genomic: TCGGTACTGAGgtacaatatc ... cgttgtacagGATCTGGATTTGTATGGGATACTTGAAGAAACAGCGAGGCGTGGAATGTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTATTTCTGTCATGTCTATGTGGACTCGTGTACAACCTGCATATGCTGCTAATATGTGGAACGAGGCACTTAATAAACGACTCGGTACTGAGgtacaatatccagtttctattgttcttcagattaggacgtacaggctaactaataagtttccgttgtacag
- - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - GCTGCT