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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTTAATGAAGCTCTAAAGCATGATTGGTTCCGCGAAGTCCCTCTGCCAAAATCCAAAGATTTCATGCCTACTTTTCCTGCTCAACATGCCCAAGACAGgtactgaggtctatctaaactgaaacgatcagtggttgactttaattctgtctcttactttttcttctatgcctag

Basic information

species Arabidopsis thaliana
transcript AT1G67580.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G67580.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os02g39010.2 (Oryza sativa), 5'ss of exon 6
CTGTTAATGAAGCTCTAAAGCATGATTGGTTCCGCGAAGTCCCTCTGCCAAAATCCAAAGATTTCATGCCTACTTTTCCTGCTCAACATGCCCAAGACAGgtactgaggtctatctaaactgaaacgatcagtggttgactttaattctgtctcttactttttcttctatgcctag-----------------------
| |   | || ||  | || ||||| ||||| |||||| | |||||||| | ||| || ||||||||||| || |||||||||| | |||  ||||||||||||    |   || |    |   ||    | |   | |   ||||||||    |  | |||| |    |   ||                        
CAGCAGAAGATGCCTTGAATCATGAATGGTTTCGCGAACTACCTCTGCCTAGATCAAAGGATTTCATGCCAACATTTCCTGCTCTAAATGAGCAAGACAGgtacgagtg---attttgctttttacttctaatttatcatcctaattctgaaattggcgttttatgtggtttgtaatgttgtatttgcaaaacatgcag

upper sequence: AT1G67580.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os04g41100.6 (Oryza sativa), 5'ss of exon 7
CTGTTAATGAAGCTCTAAAGCATGATTGGTTCCGCGAAGTCCCTCTGCCAAAATCCAAAGATTTCATGCCTACTTTTCCTGCTCAACATGCCCAAGACAGgtactg----aggtctatctaaactgaaacgatcagtggttgactttaattctgtctcttactttttcttctatgcctag----------
| |   |||  ||| |  ||||||| |||||||| ||||| ||||| || ||||| || ||||||||||| || || ||||||| | |||    |||||||||||         | || ||| ||      |    || || | | |  || | ||   || |     || | | ||||           
CAGCAGATGCTGCTTTGCAGCATGAGTGGTTCCGTGAAGTTCCTCTACCTAAATCAAAGGATTTCATGCCAACATTCCCTGCTCTAAATGAATTAGACAGgtacttcttcgcaaccatttaatctacttgtagtgttgcttaaatatctttgtttcatgtagtgaaatttattttcctaaaattccacag

upper sequence: AT1G67580.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G10810.1 (Glycine max), 5'ss of exon 5
CTGTTAATGAAGCTCTAAAGCATGATTGGTTCCGCGAAGTCCCTCTGCCAAAATCCAAAGATTTCATGCCTACTTTTCCTGCTCAACATGCCCAAGACAGgtactgaggtctatctaaa----ctgaaacgatcagtggttgactttaattctgtctcttactttttcttctatgcctag--------------------------------------------------------------------------------------------------
|||   | || |||||||| ||||| |||||||| ||||| ||||| || |||   ||||| ||||||||||| ||||||||||||||||| || |||||||| |  |  |||  |  |    ||| | | ||   |    || |||  || |||   |||  || |||  | ||  ||                                                                                                   
CTGCCGAAGATGCTCTAAATCATGAGTGGTTCCGTGAAGTTCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtaatttgacctaattggaaatgctggagcaatttttataagaatttttttttgt---ttatgttctctagtctggataaaagagggaagttgtgtaaaatatttgctgagtctatactatataacatttatcaacttttatttttgacaagttttcataatttcatcatataaatag

upper sequence: AT1G67580.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G27820.1 (Glycine max), 5'ss of exon 8
CTGTTAATGAAGCTCTAAAGCATGATTGGTTCCGCGAAGTCCCTCTGCCAAAATCCAAAGATTTCATGCCTACTTTTCCTGCTCAACATGCCCAAGACAGgtactgaggtcta-tctaaactgaaacgatcagtggttgactttaattctgtctcttactttttcttctatgcctag---------------------------------------------------------------------------------------
|||   | |  |||||||| ||||| ||||| || ||||| ||||| || |||   ||||| ||||||||||| ||||||||||||||||| || |||||||| |  |  ||| |   || ||        | |   | |    ||  || | | | | | | |  ||||     |                                                                                        
CTGCCGAAGCTGCTCTAAATCATGAGTGGTTTCGTGAAGTTCCTCTCCCCAAAAGTAAAGAATTCATGCCTACATTTCCTGCTCAACATGCTCAGGACAGgtattttgacctaataggaaatgctggagcaattttattaaagaaaaactttttgtaattctcttgtctagataaaagagggaagttgtgtaaatatttgttgaccctatataacatttatttttgacaagttgtcataatttcatcaatcatcatataaatag

upper sequence: AT1G67580.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G37270.1 (Glycine max), 5'ss of exon 5
CTGTTAATGAAGCTCTAAAGCATGATTGGTTCCGCGAAGTCCCTCTGCCAAAATCCAAAGATTTCATGCCTACTTTTCCTGCTCAACATGCCCAAGACAGgt-actgaggtctatctaaactgaaacga-tcagtggttgactttaattctgtctcttactt-----tttcttctatgcctag--------
| | | | ||||||||||| ||||| ||||| || ||||| || || || || || ||||| || |||||||| || |||||||||||||| |||||||||| ||  |     || |   ||      | |   |  || | |||| || |   | | |||      | |  |||||   ||         
CAGCTGAAGAAGCTCTAAACCATGAGTGGTTTCGTGAAGTTCCCCTTCCGAAGTCTAAAGAATTTATGCCTACATTCCCTGCTCAACATGCTCAAGACAGgtgaccaaataagattttgcctatggtaaatttttttttaattttacttgttcatttgactcatatatatgctctataattatgtaaatag

upper sequence: AT1G67580.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G01230.1 (Glycine max), 5'ss of exon 8
CTGTTAATGAAGCTCTAAAGCATGATTGGTTCCGCGAAGTCCCTCTGCCAAAATCCAAAGATTTCATGCCTACTTTTCCTGCTCAACATGCCCAAGACAGgt-actgaggtctatctaaactgaaacga-tcagtggttgactttaattctgtctcttactttttc---ttctatgcctag
| | | | ||||||||||| ||||| ||||| || ||||| || || || || || ||||| || |||||||| || |||||||||||||| || ||||||| ||  |     || |   ||      | |   |  || | |||| || |   | | ||  | |    || | |   |||
CGGCTGAAGAAGCTCTAAACCATGAGTGGTTTCGTGAAGTTCCCCTTCCGAAGTCTAAAGAATTTATGCCTACATTCCCTGCTCAACATGCTCAGGACAGgtgaccaaataagattttgcctatggtaaattgttttttaattttacttgttcatttgacgctctataattatgtaaatag

upper sequence: AT1G67580.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv01s0010g02550.t01 (Vitis vinifera), 5'ss of exon 5
CTGTTAATGAAGCTCTAAAGCATGATTGGTTCCGCGAAGTCCCTCTGCCAAAATCCAAAGATTTCATGCCTACTTTTCCTGCTCAACATGCCCAAGACAGgtactgaggtc---tatctaaactgaaacgatcagtggtt--gactttaattct-gtctcttactttttcttctatgcctag---------------------
| | | | |  ||||| || |||||||||||||||||||| ||||| || ||||| ||||||||||||||||||||||||||||| |||||||| ||||||||    |  |   ||  | |  | ||| ||    ||  |  || |  | || |  | | |||       |||||     |                      
CAGCTGAAGCTGCTCTTAACCATGATTGGTTCCGCGAAGTTCCTCTTCCCAAATCTAAAGATTTCATGCCTACTTTTCCTGCTCAGCATGCCCAGGACAGgtatcttgaccctatacatgactttaaatgagagatgagtaggagtgcagtttttattttttatagcaatttctaaaataaattttgttcatttgattatcag