ERISdb: a Database of Plant Splice Sites

General
Orthologs
EST
cis-regulatory elements

Sequence

atgc intronic sequence ATGC exonic sequence

TTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatatatttcatctcattggaaaaattcaggactagtgttaataacaacagtgttctcatttcgtatttgtttttgataattgtag

Basic information

species	Arabidopsis thaliana
transcript	AT1G67430.2
intron #	5
splice site	5'
intron type	U2

Orthologous splice sites

atgc intronic sequence ATGC exonic sequence

upper sequence: AT1G67430.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G148744_T01 (Zea mays), 5'ss of exon 6

-----------------------------TTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatatat-ttcatctcattggaaaaattcaggactagtgttaataacaacagtgttctcatttcgtatttgtttttgataattgtag----------
                              |||| ||||||||||||||||||||||| || ||||||||| || | || ||||||  ||   |   ||  |    |  ||   ||     || || ||| |||||  |  | ||||||      ||            
CCTACATGTCCTCACCTTGCCACATTGAGCTGATCTTGTCAGAGAAGGAAGAGCCTGTGAAGAAAGAGgtattacacatgttcatcaaatgccatctatatattttttctgagcatcttg-cattggtctaatttcagagctatttttggcttaggttcttatggtaca

upper sequence: AT1G67430.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G702426_T01 (Zea mays), 5'ss of exon 6

-----------------------------TTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatatat-ttcatctcattggaaaaattcaggactagtgttaataaca-acagtgttctcatttcgtatttgt-ttttgataattgtag----------------------------------------------------------------------------
                              ||||| |||||||||||||||||||||| || ||||||||| |  | ||  ||||   | ||  ||     ||   |  | | | || |   || || ||| |||||  |  ||| || |  |  | |||                                                                             
CTTACATGTCCTCCCCTTGCCACATTGAGCTGATTCTGTCAGAGAAGGAAGAGCCTGTGAAGAAAGAGgtatttaacatgctcataaaaatgccaa---ctagatattttctgagtatcttgcattgatctaatttcagagctgtattgttcttctggtacagaagtatccttccattttatgttctttccatttgaatagtatctgtctgtaatatatgtcatctttattttgtag

upper sequence: AT1G67430.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA11G37160.1 (Glycine max), 5'ss of exon 6

-----------------------------TTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatatatttcatctcattggaaaaattcaggactagtgttaataacaacagtgttctcatttcgtatttgtttttgataattgtag
                              |||| ||||| ||||||||||||||||| || |||||||||||  ||    ||||||  ||  || | |    |    |  |  |  |    |  |    | ||| ||| | || ||| |  ||||||
CTTACATGTCATCTCCATGCCACATTGAGCTGATATTGTCTGAGAAGGAAGAGCCTGTGAAGAAAGAGgtaatg-attgaccatctctctgttaacagtatatatacttcctcttttcttttgcatca--aattcttatctattattgttc-ttgtag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments

ATGC    EST sequence
ATGC    genomic sequence (exon)
ATGC    genomic sequence (truncated intron)

EST: gi|164093321|gb|ES158526.1|ES158526

EST:     TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAGAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAG
genomic: TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAG

EST: gi|125016612|gb|EL088881.1|EL088881

EST:     CAGAGAAGGAAGAGCCTGTCAAAAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC
genomic: CAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC

EST: gi|124920752|gb|EH994437.1|EH994437

EST:     TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTC-AAAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAG
genomic: TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAG

EST: gi|164163051|gb|ES094763.1|ES094763

EST:     TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAGAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCT
genomic: TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCT

EST: gi|124770610|gb|EH860740.1|EH860740

EST:     TGAGTTGATTTTGTCAGAGAAGGAAGAGCCAGTCAAAAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAA
genomic: TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAA

EST: gi|163987297|gb|ES142757.1|ES142757

EST:     TTGTCAGAGAAGGAAGAGCCTGTCAAGAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC
genomic: TTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC

EST: gi|164002507|gb|ES052037.1|ES052037

EST:     TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAGAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAA-TCAGCAGCTTAAGCTTTC
genomic: TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC

EST: gi|124889231|gb|EH968133.1|EH968133

EST:     ATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC
genomic: ATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC

EST: gi|164066743|gb|ES210326.1|ES210326

EST:     GGAAGAGCCTGTCAAGAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGC
genomic: GGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGC

EST: gi|164217898|gb|ES110076.1|ES110076

EST:     TGATTTTGTCAGAGAAGGAAGAGCCTGTCAAGAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC
genomic: TGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAGCTTTC

EST: gi|125229440|gb|EL243525.1|EL243525

EST:     TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAG                         CCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAG
genomic: TGAGTTGATTTTGTCAGAGAAGGAAGAGCCTGTCAAAAAAGAGgtaatatata ... ataattgtagCCGGAGACTCAGTTGGCTGCCAAGTCCAAGAAATCAGCAGCTTAAG

Putative cis-regulatory sequences

atgc	intron	ATGC	exonic elements by Pertea et al.
ATGC	exon	atgc	putative intronic elements
		ATGC	putative exonic elements identified for retained introns