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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACATgtaattcttatcatccatcatcatcagtgattttctaacattgcaattgtttttttgtttcaataaaaaaaatggtgtcatctttgatcag

Basic information

species Arabidopsis thaliana
transcript AT1G65700.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G65700.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv16s0039g00240.t01 (Vitis vinifera), 5'ss of exon 5
GAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACATgtaattcttatcatccatcatcatcagtgattttctaacattgcaattgtttttt-tgtttcaataaaaaaaatggtgtcatctttgatcag
||||| || ||||| | |||||||||||||||||| || || || ||||||||||||||  | || ||||   | ||  |||| ||    || |||  ||     |   || |  ||||       |    |    ||    |||
GAAGGCGTTCAACAGCTTGTGTTGGGTTTGTACATAATAAGGGGTGACAACATgtaattgctttcttccact-taat--gtgaattc---accttgttatctcactacatgctataatattgtttttaacattggattcttgcag

upper sequence: AT1G65700.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ21859 (Selaginella moellendorffii), 5'ss of exon 4
GAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACATgtaattcttatc-atccatc-atc-atcagtgattttctaacatt--gcaattgtttttttgtttcaataaaaaaaatggtgtcatctttgatcag
   |||||| | || ||||| ||||| ||||||||||| ||||| ||||||||||||    | || || | || ||| |||    ||||| |     |  |||                                              
ACTGGAGTAGAGCAGCATGTCTTGGGATTGTACATCATTAGAGGCGACAACATgtaagaactctcgattcttcgatcgatctaaaatttttttgttcttggcag---------------------------------------------

upper sequence: AT1G65700.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ34241 (Selaginella moellendorffii), 5'ss of exon 3
GAAGGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACATgtaattcttatc-atccatc-atc-atcagtgattttctaacatt--gcaattgtttttttgtttcaataaaaaaaatggtgtcatctttgatcag
   |||||| | || ||||| ||||| |||||||| |||||||| ||||||||||||    | || || | || ||| |||    ||||| |     |  |||                                              
ACTGGAGTAGAGCAGCATGTCTTGGGATTGTACATTATCAGAGGCGACAACATgtaagaactctcgattcttcgatcgatctaaaatttttttgttcttggcag---------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164070436|gb|ES199870.1|ES199870
EST:     GGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACAT                         AGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTC
genomic: GGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACATgtaattctta ... ctttgatcagAGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTC
EST: gi|164217235|gb|ES147321.1|ES147321
EST:     GAGTACAACAACATGTGTTGGGTTTGTTACATCATCAGAGGGGACAACAT                         AGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTC
genomic: GAGTACAACAACATGTGTTGGGTTTG-TACATCATCAGAGGGGACAACATgtaattctta ... ctttgatcagAGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTC
EST: gi|164101524|gb|ES122683.1|ES122683
EST:     AACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACAT                         AGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTCTGGATTTTTC
genomic: AACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACATgtaattctta ... ctttgatcagAGGTGTTATCGGGGAGCTGGACGAGGAGCTTGATGCTAGTCTGGATTTTTC
EST: gi|164200742|gb|ES085655.1|ES085655
EST:     GGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACAT                         AGGTGTTATCGGGGA
genomic: GGAGTACAACAACATGTGTTGGGTTTGTACATCATCAGAGGGGACAACATgtaattctta ... ctttgatcagAGGTGTTATCGGGGA