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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGGGTCGCAACGGTGACGCCATGGGTGGTACCGGTTGGTCCATGACTGAGTTTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAGgttagtattagtagcgtaacccaatttttgaattttgtggttaaccggttttgacaatcttggtttgatactaaaccggttattttgtttctttctttgacag

Basic information

species Arabidopsis thaliana
transcript AT1G64390.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G64390.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G02610.1 (Glycine max), 5'ss of exon 5
CTTGGGTCGCAACGGTGACGCCATGGGTGGTACCGGTTGGTCCATGACTGAGTTTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAGgttagtattagtagcgt--aacccaatttttgaattttg------tggttaaccggttttgacaatcttggtttg-----------atactaaac--cggttattttgtttctttctttgacag----------
| | ||  | || |||||  |||||||||| || ||||||  ||||||||| ||||||||||| || ||||| ||||||||||| ||  | ||||||||||| |  |  | |    |  || |  ||   | | |  ||      |    |||     |     | |||  ||||           |||  ||||    || |    ||  ||||| |||              
CCTTGGAAGAAATGGTGATTCCATGGGTGGAACTGGTTGGAGCATGACTGAATTTGGTTGGGATGTCAAGTATGCTGGTGTTCAGACATTAGTTGCCAAGgt-aacaccaatgatttttaatcttatcaataattaatgaaaaagtaaaaaacaaacataagttagcttcttttgtgtatattattatatcaaacattagtgaccaagtagctttccttgtttcttccttgcag

upper sequence: AT1G64390.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G36930.1 (Glycine max), 5'ss of exon 5
CTTGGGTCGCAACGGTGACGCCATGGGTGGTACCGGTTGGTCCATGACTGAGTTTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAGgt--tagtattagtagcgtaacc------caatttttgaattttgtggttaaccggttttgacaatcttggtttg---atactaaaccggttattttgt-ttctttctttgacag-----------------------
| | ||  | || |||||  |||||||||| || ||||||   |||||||| ||||||||||| || ||||| ||||||||||| ||  | |||||||||||   |  |||  |    || |       |||||  ||||    ||  | |||     | |   | |||  ||||    || || | |    ||      ||  |   |   |||                       
CCTTGGAAGAAATGGTGATTCCATGGGTGGAACTGGTTGGAAGATGACTGAATTTGGTTGGGATGTCAAGTATGCTGGTGTTCAGACATTAGTTGCCAAGgtaacaccattgattctttatcttataaacaattagtgaaaaa-gtaataaacaaacataggttagcttcttttgtgtgtattatatcaaacatcacacattagtgaataagcagctttccttgtttcttcctggcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124997017|gb|EL069286.1|EL069286
EST:     CGCTGGTGTTCAAACCCTTGTTGCCAAG                         T
genomic: CGCTGGTGTTCAAACCCTTGTTGCCAAGgttagtatta ... tctttgacag-
EST: gi|124997017|gb|EL069286.1|EL069286
EST:     CGCTGGTGTTCAAACCCTTGTTGCCAAG                         T
genomic: CGCTGGTGTTCAAACCCTTGTTGCCAAGgttagtatta ... tctttgacag-
EST: gi|116479730|gb|EG522322.1|EG522322
EST:     AGTTTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAG                         TTTTTGATGCAAGGCAAAGCAGGACGTCACGCACCTGTGTCCAGGAAGTAT
genomic: AGTTTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAGgttagtatta ... tctttgacagTTTTTGATGCAAGGCAAAGCAGGACGTCACGCACCTGTGTTCAGGAAGTAT
EST: gi|124725018|gb|EH816420.1|EH816420
EST:     AGTTTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAG                         TTTTTGATGCAAGGCAAAGCAGGACGTACACGCACCTGTGTTCAGGAAGTA
genomic: AGTTTGGTTGGGACGTTAAGTACGCTGGTGTTCAAACCCTTGTTGCCAAGgttagtatta ... tctttgacagTTTTTGATGCAAGGCAAAGCAGGACGT-CACGCACCTGTGTTCAGGAAGTA