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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGAAGCTCATAACAGATGGTTGGCAGTAGCAGAATTAGCCTTACCAGAAGACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCGgtaattcaaacaatcttggttgagtagagaccatacgaggttgttgctgtcttgagactttcaaactaaacctctttttggatatctttgaatacag

Basic information

species Arabidopsis thaliana
transcript AT1G64350.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86079867|gb|DR375624.1|DR375624
EST:     GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCG                         ACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
genomic: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCGgtaattcaaa ... ttgaatacagACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
EST: gi|86044889|gb|DR340644.1|DR340644
EST:     GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCG                         ACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
genomic: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCGgtaattcaaa ... ttgaatacagACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
EST: gi|116457542|gb|EG500134.1|EG500134
EST:     GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCG                         ACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
genomic: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCGgtaattcaaa ... ttgaatacagACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
EST: gi|116430790|gb|EG473382.1|EG473382
EST:     GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCG                         ACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
genomic: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCGgtaattcaaa ... ttgaatacagACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
EST: gi|116430791|gb|EG473383.1|EG473383
EST:     GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCG                         ACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA
genomic: GACAAAGGTGATCCAGTTTATGCTTTGTCATGGGCTCCGAATATTGGCCGgtaattcaaa ... ttgaatacagACCATACGAGGTTGTTGCCGTTGCAACTCATAAAGGCATAGGAATATGGCA