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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGATATCATTGATCAGAAGCCATGCAGAGGTCATTGTTAATGATGATACTGTGTTCCCTGTTTTTCAGAAATTTTGCAAGgtaaagctcagagcttttggtgttgtcattttgataatagttctcgatttctcgaagaactctatcactcttcttaatgtatctggtgttttgatagtttcctttctactgttttcttgaagaaataacggatttgttgttcgtttcttttcttttccag

Basic information

species Arabidopsis thaliana
transcript AT1G62305.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116385380|gb|EG427972.1|EG427972
EST:     TCATTGTTAATGATGATACTGTGTTCCCTGTTTTTCAGAAATTTTGCAAG                         CGATCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTT
genomic: TCATTGTTAATGATGATACTGTGTTCCCTGTTTTTCAGAAATTTTGCAAGgtaaagctca ... tcttttccagCGATCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTT
EST: gi|116385363|gb|EG427955.1|EG427955
EST:     TCATTGTTAATGATGATACTGTGTTCCCTGTTTTTCAGAAATTTTGCAAG                         CGATCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTT
genomic: TCATTGTTAATGATGATACTGTGTTCCCTGTTTTTCAGAAATTTTGCAAGgtaaagctca ... tcttttccagCGATCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTT
EST: gi|116385379|gb|EG427971.1|EG427971
EST:     TCATTGTTAATGATGATACTGTGTTCCCTGTTTTTCAGAAATTTTGCAAG                         CGATCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTT
genomic: TCATTGTTAATGATGATACTGTGTTCCCTGTTTTTCAGAAATTTTGCAAGgtaaagctca ... tcttttccagCGATCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTT
EST: gi|116385383|gb|EG427975.1|EG427975
EST:     TCATTGTTAATGATGATACTGTGTTCCCTGTTTTTCAGAAATTTTGCAAG                         CGATCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTT
genomic: TCATTGTTAATGATGATACTGTGTTCCCTGTTTTTCAGAAATTTTGCAAGgtaaagctca ... tcttttccagCGATCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTT
EST: gi|116385604|gb|EG428196.1|EG428196
EST:     TCATTGTTAATGATGATACTGTGTTCCCTGTTTTTCAGAAATTTTGCAAG                         CGATCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTT
genomic: TCATTGTTAATGATGATACTGTGTTCCCTGTTTTTCAGAAATTTTGCAAGgtaaagctca ... tcttttccagCGATCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTT
EST: gi|124957061|gb|EL031930.1|EL031930
EST:     AGAAATTTTGCAAG                         CGTATTCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTT
genomic: AGAAATTTTGCAAGgtaaagctca ... tcttttccagCG-A-TCTCTACCTCTGGATCCCAGAAAGAATTGGCTATATCTT