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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAgtaagatttaaaagatttaaccattggactaaaagattcttgttgtaaaaacattagagatttcaatgtatatatgtttgcgtgattggctaatacgttcggtccgaaatgatatttatag

Basic information

species Arabidopsis thaliana
transcript AT1G62300.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G62300.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os01g14440.1 (Oryza sativa), 5'ss of exon 4
TCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAgtaa-gatttaaaagatttaaccattggactaaa----agattcttgttgtaaaaacattagagatttcaatgtatatatgtttgcgtgattggctaatacgttcggtccga---aatgatatttatag----------------------
 |||||||| || || || ||||||||||| || || || |||||||| || || || ||||||||||| |||||||| ||||| || || || || || |||| ||    | |     |  || ||   ||      | |     |  ||| | |      ||   |    |||    || |  ||||  | |  ||   ||   ||  ||       |  ||| |                        
CCAATGGAGGAAGTACGGTCAGAAGATGGCGAAGGGAAACCCTTGTCCACGCGCGTACTACCGCTGCACCATGGCCACCGGCTGCCCGGTGCGGAAGCAGgtaatgaccggacacgacgactcactgagatacgggtcaaaactcagaagtagagagtacgaagggctgggagtagcagtgctaccgtg--taggcaaggggtgttgtttgattggtctaactttgtgaacgtgacggaattgaccaacag

upper sequence: AT1G62300.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G43260.1 (Glycine max), 5'ss of exon 3
TCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAgtaagatttaaaagatttaaccattggactaaaagattcttgttgtaaaaacattagagatttcaatgtatatatgtttgcgtgattggctaatacgttcggtccgaaatgatatttatag
|||||||||||| ||||| ||||||||||| ||||||||||| ||||||||  | ||||| || ||| | ||||  || |  ||||| ||||| || ||||||     |       |  | |  | ||   |   | ||||  || |||   |||     |||   | |  | |  || |  | |   || || |    |  |||  |||  |        
TCAATGGAGAAAGTATGGACAGAAGATGGCAAAAGGGAATCCATGTCCGCGATCTTATTATCGTTGCTCAATGGGGACTGCTTGTCCAGTTCGGAAGCAAgtatacact------ctcgatc--tcgatctatcaactctttatgaaaatttatttac--tttgtttttggaaagattaggctaaaatgcaaaca-acccactcc--aatcgt--------

upper sequence: AT1G62300.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G10330.1 (Glycine max), 5'ss of exon 1
TCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAgtaagatttaaaagatttaaccattggactaaaagattcttgttgtaaaaacattagagatttcaatgtatatatgtttgcgtgattggctaatacgttcggtccgaaatgatatttatag
|||||||||||| ||||| ||||||||||| ||||||||||| ||||||||  | ||||| || ||| | ||||  || |  ||||| ||||| || ||||||           ||||   |  | ||   |   | ||||  || |||   |||     |||   | | |  | ||| |  | |   || || |    |  |||  |||  ||       
TCAATGGAGAAAGTATGGGCAGAAGATGGCAAAAGGGAATCCATGTCCGCGATCTTATTATCGTTGCTCAATGGGAACTGCTTGTCCAGTTCGGAAGCAAgtat----------attttctctctcgatctatccactctttatgaaaatttatttactttttt--tttttgaaagttaggctaaactgcaaaca-acccactcc--aatcgtag------

upper sequence: AT1G62300.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G46280.1 (Glycine max), 5'ss of exon 5
TCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAgtaagatttaaaagatttaaccattggactaaaagattcttgttgtaaaaacattagagatttcaatgtatatatgtttgcgtgattggctaatacgttcggtccgaaatgatatttatag
 ||||||||||| ||||| ||||||||||| |||||||||||||| ||  | || ||||| || ||||| |||   || || ||||| || || ||||| ||| |   |       ||||    | |   ||  | |  || ||||    |   |||  | || ||   |||| ||   | |   ||   |     | | |                    
CCAATGGAGAAAGTATGGGCAGAAGATGGCGAAAGGGAATCCTTGGCCAAGAGCCTATTATCGTTGCACAATGAGTACTGGTTGTCCAGTGCGGAAACAGgtatgcact------cttaattgctaggaaaagtgttctttcttgtgctgaggctagctaatttaagcaatat-tgaaagtgaatttatgtttgctgatag--------------------

upper sequence: AT1G62300.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G17800.1 (Glycine max), 5'ss of exon 6
TCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAgtaagatttaaaagatttaaccattggactaaaagattcttgttgtaaaaacattagagatttcaatgtatatatgtttgcgtgattggctaa-tacgttcggtccgaaatgatatttatag
|||||||||||||||||| || |||||  | || || ||||||||||| ||||| ||||| |||||||  ||||  || |  ||||| |||||||| || ||  |       ||||||     ||||   || |   | ||| ||| |  || | | |   | | | || ||     || | |||||    |  |||| |   |      |           
TCAATGGAGAAAATATGGACAAAAGATATCAAAGGGCAATCCTTGTCCTCGGGCCTATTATCGCTGCAACATGGGAACTGCATGTCCAGTTCGCAAGCAGgttggtgc----agatttttttcttgg--caaca---ttttgatgtcagcacctcaaa---tcctaagtttaaccaatttcctgattcttcatctacgctttatatatttta----------

upper sequence: AT1G62300.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv19s0090g00840.t01 (Vitis vinifera), 5'ss of exon 5
TCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAgtaagatttaaaagatttaaccattggactaaaagattctt-gttgtaaaaacattagagatttcaatgtatatatgtttg-cgtgattggctaatacgttcggtccgaaatgatatttatag
 ||||||||||| ||||| || |||||||| ||||| || || || || || || ||||| || ||||| ||||| || |  ||||| ||||||||||||||| | |          | ||| |||    |    |||||| |||  ||    | |  |||    ||  | |||   || |  |  ||| | |   |                          
CCAATGGAGAAAGTATGGACAAAAGATGGCGAAAGGAAACCCATGCCCTCGAGCTTATTATCGATGCACCATGGCAACTGCTTGTCCAGTTCGCAAACAAgtatgctcctcttccaatcacccttgttacattccattcttagtttcaagtgtaattaagaaggaaaaatttattaattggatggaatttgatggcaaacag---------------------

upper sequence: AT1G62300.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S47_251V6.1 (Physcomitrella patens), 5'ss of exon 4
TCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAgtaagatttaaaagatttaaccattggactaaaagattcttgttgtaaaa--acattagagatttcaatgtatatatgtttgcgtgattggctaatacgttcggtccgaaatgat-atttatag
 || ||||| |||||||| ||||||||||| |||||||| || ||||| || ||||| ||||| |||||  | ||  |||||||||| ||||| || |||||||  | | |    | |  |   | |      |     ||| ||| ||   || ||     |||  ||  || | || ||  |   ||   |   || | ||| |     | || ||    ||
CCAGTGGAGGAAATATGGTCAGAAGATGGCGAAAGGGAACCCCTGTCCTCGTGCATACTACCGATGCACCGTTGCGCCGGGCTGTCCAGTTCGTAAGCAAgtaatgtctca----tcttccagcttgttatggattaatttgatgtcaatctactttgacatttttcataaat-tttgattatgatttttcgtgtgacttacggccttccgtcatgatccgcag

upper sequence: AT1G62300.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S158_166V6.1 (Physcomitrella patens), 5'ss of exon 5
TCAATGGAGAAAATATGGCCAGAAGATGGCCAAAGGGAATCCTTGTCCGCGGGCATATTACCGCTGCACGATGGCCACGGGCTGTCCCGTTCGCAAACAAgtaagatttaaaagatttaaccattggactaaaagattcttgttgtaaaaac--attagagatttcaatgtatatatgtttgcgtgattggctaatacgttc---ggtccgaaatgatatttatag
 || ||| | || || || ||||||||||| ||||||||||| ||||| || ||||| ||||| |||||  | ||  | || || || ||||| ||||| ||| ||  | ||  |||||||   | ||  |  |   | | | ||| ||     |||   | | ||  |||     |    | || | |||  |     ||    |  |    | |   |||  ||
CCAGTGGCGGAAGTACGGTCAGAAGATGGCTAAAGGGAATCCCTGTCCTCGTGCATACTACCGTTGCACTGTTGCGCCTGGGTGCCCAGTTCGGAAACAGgtaggaactcaat-atttaac---tcgataaggattatttagatgtgaacttttattgatgttctctgtgttctatttgaagtgtaaatggtcatgtgatttatggccctccgacgtgttttgcag