Sequence
atgc intronic sequence ATGC exonic sequenceGACGTGAATGTGTCTTCTCCCGGAGACAGTCCAAACACAGATGGGATTCATCTTCAGAACACCAGAGATGTCATGATTCACACCACCACACTAGCTTGCGgtacgaactaattgtaatcgaaaaaatcgttataaaactcgtaaatatcgggtcttaatatcgttgatttccctctgtttttccag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G60590.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G60590.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G39340.2 (Glycine max), 5'ss of exon 4
GACGTGAATGTGTCTTCTCCCGGAGACAGTCCAAACACAGATGGGATTCATCTTCAGAACACCAGAGATGTCATGATTCACACCACCACACTAGCTTGCGgtacgaactaattgtaatcgaaaaaatcgttataaaactcgtaaatatcgggtcttaatatcgttgatttccctctgtttttccag---------------
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AATGTGACCATATCATCTCCTGGGGACAGTCCTAACACAGATGGAATTCACCTTCAGAACTCCAAAGATGTGTTAATATACGGCAGCACCATGGCCTGCGgtaatatttcatgaagttatggaaaatttccatttcatttgaacat-tcatactgcaatgtgggagatagggacacaagttaaaacgaaaatgaaagttaa
upper sequence: AT1G60590.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA18G19670.1 (Glycine max), 5'ss of exon 5
GACGTGAATGTGTCTTCTCCCGGAGACAGTCCAAACACAGATGGGATTCATCTTCAGAACACCAGAGATGTCATGATTCACACCACCACACTAGCTTGCGgtacgaactaattgtaatcgaaaaaatcgttataaaactcgta----aatatcgggtcttaata---tcgttgatttccctctgtttttccag----------
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GATGTGACCATATCATCTCCTGGGGACAGTCCTAACACAGATGGAATTCACCTTCAGAACTCCAAAGATGTGTTGATATACAGCAGCTCTATGGCCTGCGgtaag---ttatggaatatttccatttcatttgaacattcatagggcaatgtaggagatagagacattagctaaaatgaaaatgaaagttcaagacaagaagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|124951701|gb|EL027043.1|EL027043EST: TCTTCAGAACACCAGAGATGTCATGATTCACACCACCACACTAGCTTGCG GAGACGATTGTATTTCGATTCAAACCGGTTGCTCCAATGT
genomic: TCTTCAGAACACCAGAGATGTCATGATTCACACCACCACACTAGCTTGCGgtacgaacta ... gtttttccagGAGACGATTGTATTTCGATTCAAACCGGTTGCTCCAATGT
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
GACGTGAATGTGTCTTCTCCCGGAGACAGTCCAAACACAGATGGGATTCATCTTCAGAACACCAGAGATGTCATGATTCACACCACCACACTAGCTTGCGgtacgaactaattgtaatcgaaaaaatcgttataaaactcgtaaatatcgggtcttaatatcgttgatttccctctgtttttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG