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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCTGGAGATTTCCTCACAGATTTCGGGTTTTTCGAGCCCTTTTGGCTCATTGACTTTGCAAACGCTTGCATCGCTGTCCACCTTATTGGTGCCTATCAGgtaaaacccaaaaccaagaagagagatcgttttttttttctcactttctcatggttggctaatgaaacgaaccatataacattttcag

Basic information

species Arabidopsis thaliana
transcript AT1G58360.1
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86080538|gb|DR376295.1|DR376295
EST:     -TGAC-TTGC-AACGC-TGCATCGCTGTCCACCTTATTGGTGCCTATCAG                         GTGTTCGCGCAGCCGATATTCCAGTTTGTTGAGAAAAAATGCAACAGAAAC
genomic: TTGACTTTGCAAACGCTTGCATCGCTGTCCACCTTATTGGTGCCTATCAGgtaaaaccca ... acattttcagGTGTTCGCGCAGCCGATATTCCAGTTTGTTGAGAAAAAATGCAACAGAAAC
EST: gi|86047649|gb|DR343404.1|DR343404
EST:     TTGACTTTGCAAACGCTTGCATCGCTGTCCACCTTATTGGTGCCTATCAG                         GTGTTCGCGC-MSCGATATTCCAGTTTGTTGAGAAAAAATGCAACAGAAAC
genomic: TTGACTTTGCAAACGCTTGCATCGCTGTCCACCTTATTGGTGCCTATCAGgtaaaaccca ... acattttcagGTGTTCGCGCAGCCGATATTCCAGTTTGTTGAGAAAAAATGCAACAGAAAC
EST: gi|116453797|gb|EG496389.1|EG496389
EST:     TTGACTTTGCAAACGCTTGCATCGCTGTCCACCTTATTGGTGCCTATCAG                         GTGTTCGCGCAGCCGATATTCCAGTTTGTTGAGAAAAAATGCAACAGAAAC
genomic: TTGACTTTGCAAACGCTTGCATCGCTGTCCACCTTATTGGTGCCTATCAGgtaaaaccca ... acattttcagGTGTTCGCGCAGCCGATATTCCAGTTTGTTGAGAAAAAATGCAACAGAAAC
EST: gi|86047662|gb|DR343417.1|DR343417
EST:     TTGACTTTGCAAACGCTTGCATCGCTGTCCACCTTATTGGTGCCTATCAG                         GTGTTCGCGCAGCCGATATTCCAGTTTTGT-GAGAAAAA-TGCAAC
genomic: TTGACTTTGCAAACGCTTGCATCGCTGTCCACCTTATTGGTGCCTATCAGgtaaaaccca ... acattttcagGTGTTCGCGCAGCCGATATTCCAGTTT-GTTGAGAAAAAATGCAAC
EST: gi|116453796|gb|EG496388.1|EG496388
EST:     TTGACTTTGCAAACGCTTGCATCGCTGTCCACCTTATTGGTGCCTATCAG                         GTGTTCGCGCAGCCGATATTCCAGTTTGTTGAGAAAAAATGCAACAGAAAC
genomic: TTGACTTTGCAAACGCTTGCATCGCTGTCCACCTTATTGGTGCCTATCAGgtaaaaccca ... acattttcagGTGTTCGCGCAGCCGATATTCCAGTTTGTTGAGAAAAAATGCAACAGAAAC