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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGCACGGACTAGTTACTTTCCTTACATGCTGTGGACTTTCAACATATTTTTTCTCTTCTGCAATCGCATTTATGAAGGATATTCTTTCTCCATTTTCGGgtgagttatgtaaatctcacatttgacacacatacttggagttgttgtatggttgctgtgaagcttaacactttgataatttctctctttgtccaag

Basic information

species Arabidopsis thaliana
transcript AT1G57600.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA10G41940.1 (Glycine max), 5'ss of exon 5
TTGCACGGACTAGTTACTTTCCTTACATGCTGTGGACTTTCAACATATTTTTTCTCTTCTGCAATCGCATTTATGAAGGATATTCTTTCTCCATTTTCGGgtgagttatgtaaatctcacat--ttgacacac---atacttggagttgttgtatggttgctgtgaagcttaacactttgataatttctctctttgtccaag
|||||| ||     |||||||||    |  | |||| || ||||||||| |||||  |||| ||||| ||||||||||||||||| ||||| || || ||||||| |   |||   |       |||  | |    || || |||||  || |||     || | |   |    | ||  ||                    
TTGCACAGAAGGAGTACTTTCCTCTTGTAGTTTGGAGTTACAACATATTGTTTCTTCTCTGTAATCGGATTTATGAAGGATATTCATTCTCTATATTTGGgtgagatgcataaggtttgttgtattgttatattttatgctaggagtaattctatttccact-taagattatgtatttacattgcag---------------

upper sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA20G25100.1 (Glycine max), 5'ss of exon 6
TTGCACGGACTAGTTACTTTCCTTACATGCTGTGGACTTTCAACATATTTTTTCTCTTCTGCAATCGCATTTATGAAGGATATTCTTTCTCCATTTTCGGgtgagttatgtaaatctcacatttgacacacatacttggagttgttgtatggttgctgtgaagcttaacactttgataatttctctctttgtccaag
|||||| ||     |||||||||    |  | |||| || ||||||||| |||||  |||| ||||| ||||||||||||||||| ||||| || || |||| ||     |||   |    ||| ||    ||| ||   | |   |  |  ||    |    ||||| | | ||   ||||   |    |      
TTGCACAGAAGGAGTACTTTCCTCTTGTAGTTTGGAGTTACAACATATTGTTTCTTCTCTGTAATCGGATTTATGAAGGATATTCATTCTCTATGTTTGGgtaagaggcataagatttg--ttttactattatattttatgctag-gagtaattctatttccacttaagattatgt--atttacattgcag------

upper sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv00s0559g00010.t01 (Vitis vinifera), 5'ss of exon 8
TTGCACGGACTAGTTACTTTCCTTACATGCTGTGGACTTTCAACATATTTTTTCTCTTCTGCAATCGCATTTATGAAGGATATTCTTTCTCCATTTTCGGgtgagttatgtaaatctcacatttgacacaca---tacttggagttgttgtatggttgctgtgaagcttaacactt----tgataatttctctctttgtccaag
||||||| || |  |||||  | |     || |||||||||||| ||||||||||  | |  ||||| ||| ||||||||||||| ||||||| ||| ||||||| | | |||  ||   || | |   |     | ||| |||| ||   ||| |          ||   |||||    |  ||| | ||   ||||   |  
TTGCACGAACAAAGTACTTCTCATCAGCACTTTGGACTTTCAACTTATTTTTTCTTATATATAATCGTATTCATGAAGGATATTCATTCTCCACTTTTGGgtgagctctctaag-ctaggatataaattattggttgctttgagtagtcagatgttcaacccatgcctactcacttatgattgtaaatgcttattttgcatag-

upper sequence: AT1G57600.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv00s0507g00010.t01 (Vitis vinifera), 5'ss of exon 5
TTGCACGGACTAGTTACTTTCCTTACATGCTGTGGACTTTCAACATATTTTTTCTCTTCTGCAATCGCATTTATGAAGGATATTCTTTCTCCATTTTCGGgtgagttatgtaaatctcacatttga---cacacatacttggagttgttgtatggttgctgtgaagcttaac-actt----tgataatttctctctttgtccaag
||||||| || |  |||||  | |   | || |||||||||||| ||||||||||  | |  ||||| ||| ||||||||||||| ||||||| ||| ||||||| | | |||  ||   || | |   |     | ||| |||| ||   ||| |       | || ||   ||||    |  ||||| ||   ||||   |  
TTGCACGAACAAAGTACTTCTCATCAGTACTTTGGACTTTCAACTTATTTTTTCTTATGTATAATCGTATTCATGAAGGATATTCATTCTCCACTTTTGGgtgagctctctaag-ctaggatataaattcttggttgctttgagtagtcagatgttcaaccccatgcctacttacttatgattgtaattgcttattttgcatag-