1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCTGACCCGTGTGATGTACAACCGTCGCAACAAGTTTAACCCTCTGTGGAACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATGgtacgtctcagtctttcaagtcacatatataaaattttcttatgaatgtaactattgatttggatccatttgcttctctctag
species | Arabidopsis thaliana |
transcript | AT1G56450.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATG GTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACTGGATTTEST: gi|124730186|gb|EH821588.1|EH821588
genomic: ACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATGgtacgtctca ... ttctctctagGTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACTGGATTT
EST: TCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATG GTGTCAATGATTGGTGTTAGTTTTGAGGAEST: gi|124883085|gb|EH961987.1|EH961987
genomic: TCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATGgtacgtctca ... ttctctctagGTGTCAATGATTGGTGTTAGTTTTGAGGA
EST: AAAATGGGAAAAGTTACCTTGGAATG GTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACTGGATTTEST: gi|124868547|gb|EH952984.1|EH952984
genomic: AAAATGGGAAAAGTTACCTTGGAATGgtacgtctca ... ttctctctagGTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACTGGATTT
EST: ACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATG GTGTCAATGATTGGTGTTAGTTTTGAGGAEST: gi|116438503|gb|EG481095.1|EG481095
genomic: ACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATGgtacgtctca ... ttctctctagGTGTCAATGATTGGTGTTAGTTTTGAGGA
EST: ACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATG GTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACTGGATTTEST: gi|164005445|gb|ES091977.1|ES091977
genomic: ACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATGgtacgtctca ... ttctctctagGTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACTGGATTT
EST: ACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATG GTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACTGGATTTEST: gi|164147243|gb|ES046447.1|ES046447
genomic: ACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATGgtacgtctca ... ttctctctagGTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACTGGATTT
EST: ACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATG GTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACTGGATTTEST: gi|124854057|gb|EH938494.1|EH938494
genomic: ACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATGgtacgtctca ... ttctctctagGTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACTGGATTT
EST: CACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGTATTG GTGTCAATGATTGGTGTTAGTTTTGAGGACGATEST: gi|124733213|gb|EH824615.1|EH824615
genomic: CACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAAT-Ggtacgtctca ... ttctctctagGTGTCAATGATTGGTGTTAGTTTTGAGGACGAT
EST: ACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATG GTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACTGGATTT
genomic: ACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATGgtacgtctca ... ttctctctagGTGTCAATGATTGGTGTTAGTTTTGAGGACGATCATGTTGCCACTGGATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTGACCCGTGTGATGTACAACCGTCGCAACAAGTTTAACCCTCTGTGGAACACTCTCGTCCTTGGAGGCGTCAAAAATGGGAAAAGTTACCTTGGAATGgtacgtctcagtctttcaagtcacatatataaaattttcttatgaatgtaactattgatttggatccatttgcttctctctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG