1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
CCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAGgtttgttggttttgctcttgaacagagtatttaagatggtcattttatcttcattcctctcacggttgttgtattgttctgtag
species | Arabidopsis thaliana |
transcript | AT1G56340.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAG AAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACEST: gi|124835539|gb|EH919978.1|EH919978
genomic: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAGgtttgttggt ... tgttctgtagAAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGAC
EST: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAG AAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAAEST: gi|116465699|gb|EG508291.1|EG508291
genomic: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAGgtttgttggt ... tgttctgtagAAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAA
EST: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAG AAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACEST: gi|116471772|gb|EG514364.1|EG514364
genomic: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAGgtttgttggt ... tgttctgtagAAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGAC
EST: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAG AAAATTAAGAACCCCGCTTACAEST: gi|116465718|gb|EG508310.1|EG508310
genomic: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAGgtttgttggt ... tgttctgtagAAAATTAAGAACCCCGCTTACA
EST: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAG AAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACEST: gi|116465735|gb|EG508327.1|EG508327
genomic: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAGgtttgttggt ... tgttctgtagAAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGAC
EST: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAG AAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACEST: gi|125241870|gb|EL255955.1|EL255955
genomic: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAGgtttgttggt ... tgttctgtagAAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGAC
EST: TACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAG AAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACEST: gi|116482410|gb|EG525002.1|EG525002
genomic: TACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAGgtttgttggt ... tgttctgtagAAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGAC
EST: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAG AAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGACEST: gi|164013391|gb|ES176434.1|ES176434
genomic: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAGgtttgttggt ... tgttctgtagAAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATGATCGAC
EST: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAG AAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATG
genomic: CTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAGgtttgttggt ... tgttctgtagAAAATTAAGAACCCCGCTTACAAGGGCAAGTGGAAGGCTCCAATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGAGGACTGGGATGATGAAGAAGATGGTGAGTGGACTGCCCCTACCATTCCCAACCCCGAGTACAATGGTGAATGGAAGCCCAAGgtttgttggttttgctcttgaacagagtatttaagatggtcattttatcttcattcctctcacggttgttgtattgttctgtag
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