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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATACTTTATCCATAACCACTTGAGTTTCCGAGTCATGTACCACAGAGACCAAGAGTCTGAATCTTCTCGCATTGTTGGTTTTGAGGTTACGCCTAACAGgtattgtctacttggttatcatcaacgttattgaagagtatgattttgtctcgattcttataagctaccctttttctctctctctttttggtaag

Basic information

species Arabidopsis thaliana
transcript AT1G55130.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G55130.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G01240.1 (Glycine max), 5'ss of exon 5
AATACTTTATCCATAACCACTTGAGTTTCCGAGTCATGTACCACAGAGACCAAGAGTCTGAATCTTCTCGCATTGTTGGTTTTGAGGTTACGCCTAACAGgtattgtctacttggttatcatcaacgttattg--aagagtatgattttgtctcgattcttataagctaccctttttctctctctctttttggtaag----
|||| |||||  ||||||||||||||||| |||||||||| ||||  || |  ||  |||  ||| |||| |||||||| |||||||| || || ||||||| ||||    ||      ||||    |    |  ||| || || |    |||  ||  |   |    |   ||   ||   |    ||||  ||      
AATATTTTATTAATAACCACTTGAGTTTCAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGGTCACCCCAAACAGgtcttgttcttttctcccccatctctctctccgttaagggtgtgctgcattctt-atgttggcataacatggttgaacttggttgggtttttatattttaa

upper sequence: AT1G55130.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G20640.1 (Glycine max), 5'ss of exon 5
AATACTTTATCCATAACCACTTGAGTTTCCGAGTCATGTACCACAGAGACCAAGAGTCTGAATCTTCTCGCATTGTTGGTTTTGAGGTTACGCCTAACAGgtattgtctacttggttatcatcaacgtt--attgaagagtatgattttgtctcg-attcttataagctaccc---tttttctctctctctttttggtaag
| || |||||  ||||||||||||||||| |||||||||| ||||  || |  ||  |||  ||| |||| |||||||| |||||||| || || ||||||| ||||   |||    | ||||    |    || ||| || || |    |||    ||    |||  |       | ||| | | |   | |||  ||  
AGTATTTTATTAATAACCACTTGAGTTTCAGAGTCATGTATCACAAGGATCCTGAAACTGGTTCTGCTCGTATTGTTGGATTTGAGGTCACCCCAAACAGgtcttgttctcttctccaccatctctctctcctttaagggtgtgttgcattcttatgttggcgtaacatggttgggtgtttatattttaatattttatat-