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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATGGCAAAATCCTTTGAGGTGACTGAATTACCAGgtatacggcttttgttcttttgtgtcttttgttatattgttcaagtttttgttgtatgtactaagtactcgtgtctagtttgttacttattctgcttttttatattatgactttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G52360.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G52360.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv09s0002g04810.t01 (Vitis vinifera), 5'ss of exon 5
GTGATGGCAAAATCCTTTGAGGTGACTGAATTACCAGgtatacggcttttgttcttttgtgtcttt-tgttatatt------gttcaagtttttgttgtatgtactaagt--actcgtgtctagtttgttac-ttattctgcttttttatatta---tgactttgcag
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ACAATGGCAAAATCATTTGAAGTCACTGAATTACCAGgtatgtacatgtactttatctgtttccatatgctctatttggtgtgattgaattcccttgatccatttttactcaatttctctcttattggtaaggttattacatgtttcaattttacattatcattgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164047583|gb|EL981896.1|EL981896
EST:     CAAAATCCTTTGAGGTGACTGAATTACCAG                         TTCGGTCAGCCAAGTTTATAGCACGAAAGCAATGGGTTGTCGCAGGAGCTG
genomic: CAAAATCCTTTGAGGTGACTGAATTACCAGgtatacggct ... gactttgcagTTCGGTCAGCCAAGTTTGTAGCACGAAAGCAATGGGTTGTCGCAGGAGCTG
EST: gi|124919533|gb|EH993287.1|EH993287
EST:     ACGCAGGTGATGGCAAAATCCTTTGAGGTGACTGAATTACCAG                         TTCGGTCAGCCAAGTTTGTAGCACGAAAGCAATGGGTTGTCGCAGGAGCTG
genomic: ACGCAGGTGATGGCAAAATCCTTTGAGGTGACTGAATTACCAGgtatacggct ... gactttgcagTTCGGTCAGCCAAGTTTGTAGCACGAAAGCAATGGGTTGTCGCAGGAGCTG