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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGGTCCGGATTCCATTGGAATCATCGCTATTTCTCATGGTTGCACTGGTGTGGCAGCACGCGCCTGTGGCCTAGTGGGTCTTGAGCCTACAAGGgtgcgtttatagaatcattctcatcgctgatttatacaatcttatactactctacatgtgtctacatatgtaacaacattcatctgttttcactattttacag

Basic information

species Arabidopsis thaliana
transcript AT1G52150.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G52150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G01940.1 (Glycine max), 5'ss of exon 5
CCTGGTCCGGATTCCATTGGAATCATCGCTATTTCTCATGGTTGCACTGGTGTGGCAGCACGCGCCTGTGGCCTAGTGGGTCTTGAGCCTACAAGGgtgcgtttatagaatcattctcatcgctgatttatacaatcttatactactctacatgtgtctacatatgtaacaacattcatctgttttcactattttacag
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||  | |||||||| |||||||| || || || || |||||  |  |  ||| | |   | ||   |   |||   | | ||   ||    |  || |||| |||     ||  | | ||     ||| ||           
CCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCTAGAGCCTGTGGTCTAGTGGGACTAGAACCCACTAGGgtaagcattgagatttacaattatttata--ttactgattgttgggcttgagtttatctgtc-acacggtcaaacatactc-----tttccag----------

upper sequence: AT1G52150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G21610.1 (Glycine max), 5'ss of exon 6
CCTGGTCCGGATTCCATTGGAATCATCGCTATTTCTCATGGTTGCACTGGTGTGGCAGCACGCGCCTGTGGCCTAGTGGGTCTTGAGCCTACAAGGgtgcgtttatagaatcattctcatcgctgatttatacaatcttatactactctacatgtgtcta-catatgtaacaacattcat-ctgttttcactattttacag
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||  | |||||||| |||||||| || || || || |||||  ||  || |||  |||          |||||||    || ||  |  |   | || || || |||  | |  | ||  ||| || ||| ||           
CCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCTAGAGCCTGTGGTCTAGTGGGACTAGAACCCACTAGGgtaagtg-atcgaactatt----------atttatatttactgatggt--ttggcttgagtttatcattcgcatgatcaaacatactctttccag----------

upper sequence: AT1G52150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G21620.2 (Glycine max), 5'ss of exon 5
CCTGGTCCGGATTCCATTGGAATCATCGCTATTTCTCATGGTTGCACTGGTGTGGCAGCACGCGCCTGTGGCCTAGTGGGTCTTGAGCCTACAAGGgtgcgtttatagaatcattctcatcgctgatttatacaatcttatactactctacatgtgtctacatatgtaacaacattcatctgttttcactattttacag
|||||||||||||||||||||||| | ||||||||||||||||||| ||||||||||||| | || ||||| |||||||| || || || || |||||  ||  || |||  ||| |      | | | ||    | |      | |  |      |  ||||    ||  | | ||     ||| ||           
CCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCAATGGTGTGGCAGCAAGAGCTTGTGGTCTAGTGGGACTAGAACCCACTAGGgtaagtg-atcgaactattatttatatttactgatg--gtttggcttgagttcat---cattcacatgatcaaacatactc-----tttccag----------

upper sequence: AT1G52150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G01950.1 (Glycine max), 5'ss of exon 5
CCTGGTCCGGATTCCATTGGAATCATCGCTATTTCTCATGGTTGCACTGGTGTGGCAGCACGCGCCTGTGGCCTAGTGGGTCTTGAGCCTACAAGGgtgcgtttatagaatcattctcatcgctgatttatacaatcttatactactctacatgtgtctacatatgtaacaacattcatctgttttcactattttacag
|||||||||||||||||||||||| | |||||||||||  |||||||||| || |||||| | || |||||  ||||||| || || || || |||||  ||  || |||  ||| |    | | | | ||    | |      | | ||      |  ||||    ||  | | ||     ||| ||           
CCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCACAGTTGCACTGGAGTAGCAGCAAGAGCTTGTGGTTTAGTGGGACTAGAACCCACTAGGgtaagtg-attgaactattatttatgtttactgatt--gtttggcttgagtttat---cattcacatgatcaaacatactc-----tttccag----------

upper sequence: AT1G52150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv09s0002g03740.t01 (Vitis vinifera), 5'ss of exon 5
CCTGGTCCGGATTCCATTGGAATCATCGCTATTTCTCATGGTTGCACTGGTGTGGCAGCACGCGCCTGTGGCCTAGTGGGTCTTGAGCCTACAAGGgtgcgttta-tagaatcattctcatcgctgatttatacaatcttatactactctacatgtgtctacatatgtaacaacattcatctgttttcactattttacag
|||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||| ||||||||||||||  |||   |   ||| || |  |   |  ||| | ||  |||||   |   |  || || || |||      ||                            
CCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGAGTGGCAGCACGAGCCTGCGGCCTGGTGGGTCTAGAGCCTACAAGGgtaagttgggttttatctttttgtttcttcctttctgcag-cttattaaataattaat-tggcttcattccattcag---------------------------