1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
CTCATGCCTTGTGAATGGAGGAGTATCTGAAGTGAACAACTCCTTATGTAATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGTGgtagttgtaccctgaacaatatgttttctttattctctgtgtcttcctaaatatttatgcttgtttcagcactaacttaagtaaaacctgcatcatagag...
species | Arabidopsis thaliana |
transcript | AT1G51690.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGTGG TEST: gi|86070772|gb|DR366529.1|DR366529
genomic: ATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGT-Ggtagttgtac ... acatatacag-
EST: ATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGTGG TEST: gi|86070772|gb|DR366529.1|DR366529
genomic: ATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGT-Ggtagttgtac ... acatatacag-
EST: ATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGTGG TEST: gi|125027931|gb|EL100200.1|EL100200
genomic: ATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGT-Ggtagttgtac ... acatatacag-
EST: TTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGTG GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGEST: gi|86070770|gb|DR366527.1|DR366527
genomic: TTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGTGgtagttgtac ... acatatacagGTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATG
EST: GACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATNNNNNTGGTA GTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGC
genomic: GACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGAT--TACCAGTGgtagttgtac ... acatatacagGTAACTAGCCATGAGTCGAGCCCTGTGGCTAGATGTCGAAGAGTATATGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCATGCCTTGTGAATGGAGGAGTATCTGAAGTGAACAACTCCTTATGTAATGACTTCTCATTGCCAGCAGGAGGCATCTCTTCGCTGCGATTACCAGTGgtagttgtaccctgaacaatatgttttctttattctctgtgtcttcctaaatatttatgcttgtttcagcactaacttaagtaaaacctgcatcatagag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaacaata
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aagtaaaa