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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACGTTAATTCCAGAGAGTGTTGTCTTCAGCTTTGGGACGTTTCTTTTGGATCTTCTTAGTGGGAAACACATTCCTCCAAGTCATgtgagtgacaaaaattcatctagttaccttgcaaattggtttggtttctatttccaaaatgacgtgtcttttattgcactctctttattcag

Basic information

species Arabidopsis thaliana
transcript AT1G50990.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G50990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ20301 (Selaginella moellendorffii), 5'ss of exon 5
GTACGTTAATTCCAGAGAGTGTTGTCTTCAGCTTTGGGACGTTTCTTTTGGATCTTCTTAGTGGGAAACACATTCCTCCAAGTCATgtgagtgacaaaaattcatctagttaccttgcaaattggtttggtttctatttccaaaatgacgtgtcttttattgcactctctttattcag
|||   |||  || ||||||||| | |  || | ||| ||  |||| |||||||||||||| ||||| |||||||||||||| || ||||||||   |||    ||   ||| ||||  | || ||      | |  |||     | | ||||                         
GTAGAGTAACACCCGAGAGTGTTATTTATAGTTATGGTACTGTTCTCTTGGATCTTCTTAGCGGGAAGCACATTCCTCCAAGCCACgtgagtgattcaaagc--tcctcttagcttgtgagtttgta-atcctgtgcttct----tcatgtgtgcag---------------------

upper sequence: AT1G50990.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: EFJ23298 (Selaginella moellendorffii), 5'ss of exon 5
GTACGTTAATTCCAGAGAGTGTTGTCTTCAGCTTTGGGACGTTTCTTTTGGATCTTCTTAGTGGGAAACACATTCCTCCAAGTCATgtgagtgacaaaaattcatctagttaccttgcaaattggtttggtttctatttccaaaatgacgtgtcttttattgcactctctttattcag
|||   |||  || ||||||||| | |  || | ||| ||  |||| |||||||||||||| ||||| |||||||||||||| || || |||||   |||    ||   ||| ||||  | || ||      | |  |||     | | ||||                         
GTAGAGTAACACCCGAGAGTGTTATTTATAGTTATGGTACTGTTCTCTTGGATCTTCTTAGCGGGAAGCACATTCCTCCAAGCCACgtaagtgattcaaagc--tcctcttagcttgtgagtttgta-atcctgtgcttct----tcatgtgtgcag---------------------