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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGAGAAGATGGAAACTGTTGGATCAGAAACAGAGGCTTATGCCATAGCCGATACTATTTCTgtaagtgattttactgaaactatctacatttttcttctgattgtacaaacacgaagttccttttgctgatgtttgtcactgattattgtttcgatagatggtatgcaaataacctatgtagcagctttgattctcatcgcctcactgttttttatttttatgtggcgtattag

Basic information

species Arabidopsis thaliana
transcript AT1G49970.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G49970.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv03s0091g00700.t01 (Vitis vinifera), 5'ss of exon 5
AATGAGAAGATGGAAACTGTTGGATCAGAAACAGAGGCTTATGCCATAGCCGATACTATTTCTgtaagtgattttactgaaactatcta-catttttcttctgattgtacaaac-acgaa-gttccttttgctgatgtttgtcactgattattgtttcgatagatggtatgcaaataacctatgtagcagctttgattctcatcgcctcactgttttttatttttatgtggcgtattag
|||||||||||||| ||||||||||| ||||| ||||| ||||| || || ||| | ||  | ||||||  |   | |     ||| |  |||||||    |   | ||  ||  | | | ||| |||    | | ||       |  |   |||| |   ||                                                                            
AATGAGAAGATGGAGACTGTTGGATCTGAAACTGAGGCATATGCTATTGCTGATTCCATGGCGgtaagtattaacattagttatatgtggcattttttgcttatatttattaattatggatgtttcttggaatcaagtgacaggttcctagctgttccaccag----------------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47831292|gb|CK120976.1|CK120976
EST:     AAACTGTTGGATCAGAAACAGAGGCTTATGCCATAGCCGATACTATTTCT                         TATTGCAAATCAGATGTATACACTATCAATTGTGGCATGGCTTTTGGTCAA
genomic: AAACTGTTGGATCAGAAACAGAGGCTTATGCCATAGCCGATACTATTTCTgtaagtgatt ... ggcgtattagTATTGCAAATCAGATGTATACACTATCAATTGTGGCATGGCTTTTGGTCAA