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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGGCACATCATAAAAGATGTTCCCAATAGCTATTTCAGGCACATCATACTACAGAACAATGAGAATAAGCCGGTCACCAACAGTCGAGACACACAAGAGgttaattttcctactagaccacgctttgaagattttcacattcagaatttgctaatatatcattttcttctgcag

Basic information

species Arabidopsis thaliana
transcript AT1G48110.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G48110.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G04270.1 (Glycine max), 5'ss of exon 3
ATGGCACATCATAAAAGATGTTCCCAATAGCTATTTCAGGCACATCATACTACAGAACAATGAGAATAAGCCGGTCACCAACAGTCGAGACACACAAGAGgt---taattttcctactagacc-acgctttgaagattttcacattcagaatttgctaatatatcattttcttctgcag-------------------------
 |||||||||||||||||||| || |||    |||| |||||||| |||||| ||||||||||||| || || ||||| || ||  ||||||||||||||||   ||  ||   |  | || |  |  || |    ||| |  ||  ||| ||  | | | |  |       |  |||                          
GTGGCACATCATAAAAGATGTGCCAAATGCAAATTTTAGGCACATTATACTAGAGAACAATGAGAACAAACCTGTCACTAATAGCAGAGACACACAAGAGgtatgtatattgttttttggatctgcagttcg----tttaccaatgtagatttgacaagtctgcccaacctataggcatttaaccttaatgtttgactaagttt

upper sequence: AT1G48110.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G03590.1 (Glycine max), 5'ss of exon 6
ATGGCACATCATAAAAGATGTTCCCAATAGCTATTTCAGGCACATCATACTACAGAACAATGAGAATAAGCCGGTCACCAACAGTCGAGACACACAAGAGgttaattttcctactagaccacgctttgaagattttcacattcagaatttgctaatatatcattttcttc-tgcag--------------------------
 |||||||||||||||||||| || |||    |||| |||||||| | |||  |||||||||| |||||||| || || || ||  ||||||||||||||||  || ||  | ||   | |   ||| |  | |||   | |   |  ||  |  | || ||||||  |  || |                           
GTGGCACATCATAAAAGATGTACCAAATCCAAATTTTAGGCACATTACACTGGAGAACAATGAAAATAAGCCAGTAACTAATAGCAGAGACACACAAGAGgt--atattatttctgctcaattttttaataagttttgaaatggcaggttcttcttttagcattttaatagtgtaagttattacatgagtagagttgcactg

upper sequence: AT1G48110.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G36110.1 (Glycine max), 5'ss of exon 7
ATGGCACATCATAAAAGATGTTCCCAATAGCTATTTCAGGCACATCATACTACAGAACAATGAGAATAAGCCGGTCACCAACAGTCGAGACACACAAGAGgt-------taattttcctactagaccacgctttga-------agattttcacattcag---aatttgctaata--tatcattttcttctgcag------
 ||| ||||||||||||||||  | |||    |||| |||||||| |||||| ||||||||||||| || || || || || ||  ||||||||||||||||       |  |||| |   |   |    | || |       ||||||    | || |   ||  |   || |  || ||||   || ||         
GTGGTACATCATAAAAGATGTGTCAAATGCAAATTTTAGGCACATTATACTAGAGAACAATGAGAACAAACCTGTTACTAATAGCAGAGACACACAAGAGgtatgtatattgtttttcggttccgcagttcctttaccaatgtagatttgacaagtctgcccaacctataaacacttaacattaatttttgagtaagttt

upper sequence: AT1G48110.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G14490.1 (Glycine max), 5'ss of exon 7
ATGGCACATCATAAAAGATGTTCCCAATAGCTATTTCAGGCACATCATACTACAGAACAATGAGAATAAGCCGGTCACCAACAGTCGAGACACACAAGAGgt---taattttcctactagaccacgctttgaagattttcacattcagaatttgctaatatatcattttcttctgcag----------------------
 |||||||| ||||||||||| || |||    |||| |||||||| |||||  |||||||||| |||||||| || || || ||  ||||| ||||||||||   || | || || ||         ||| |  | |||   | |   |  ||  |    || ||||||    |   |                      
GTGGCACATTATAAAAGATGTACCAAATCCAAATTTTAGGCACATTATACTGGAGAACAATGAAAATAAGCCAGTAACTAATAGCAGAGACGCACAAGAGgtatatattatttctgctcagaatttttttaataagttttgaaatggtatgttcttctgttaacattttacattagtgtaagttattacatgagtagagt

upper sequence: AT1G48110.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv05s0020g00460.t01 (Vitis vinifera), 5'ss of exon 7
ATGGCACATCATAAAAGATGTTCCCAATAGCTATTTCAGGCACATCATACTACAGAACAATGAGAATAAGCCGGTCACCAACAGTCGAGACACACAAGAGgttaattt--tcctactagaccacgctttgaagattttcacattcagaatttgctaatatatcattttcttctgcag-------------------------
 |||||||| ||||| ||||| || |||| | | || ||||||||||||||| ||||||||||||||||||| || || || ||| ||||||| ||||||||  ||||   | | ||     |    |||      ||    ||||||| ||   |||||   | | | |  ||||                          
GTGGCACATTATAAAGGATGTACCAAATACCAACTTTAGGCACATCATACTAGAGAACAATGAGAATAAGCCAGTGACTAATAGTAGAGACACTCAAGAGgtacatttagcctttctgtttaaattgttgcttgcatttcttttcagaagtta--aatattgtagtctatcttgcacctgtagcatcttatttcatatcaat