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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTTTGGGGCCTTTCTTCCAAAACTCTTATTCAGAAGTCAAGGTCGGTTCTTGTTCTGAATGCCAGTCAAAAGGACCGTTTACTGTTAATGTCGAACAGgtaggattctgtaatctctctatcattattttcctttaactctacgaacttcaatgtaagttattggaatgtgaaattgaccatactgttaattactcccttgtttcag

Basic information

species Arabidopsis thaliana
transcript AT1G44900.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G44900.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G03920.1 (Glycine max), 5'ss of exon 6
AGTTTTGGGGCCTTTCTTCCAAAACTCTTATTCAGAAGTCAAGGTCGGTTCTTGTTCTGAATGCCAGTCAAAAGGACCGTTTACTGTTAATGTCGAACAGgta--ggattctgtaatctctct--atcattattttcctttaactctacgaacttcaatgtaagttattggaatg--tgaaattgaccatactgttaa----ttactcccttgtttcag-----------------------------------------------------------------
| ||||||||||||| || || || || |||||||| || || || || || ||| |||| || || |||||||||||||| ||||| ||| | |||||||||     || |  || |  | |  ||    || |||   | | |    || | ||| |  || |   |  ||||  |  ||  |||  |    || |    || |    |   || |                                                                  
AATTTTGGGGCCTTTTTTTCAGAATTCATATTCAGAGGTGAAAGTGGGATCCTGTCCTGAGTGTCAATCAAAAGGACCGTTCACTGTCAATATTGAACAGgtacaaagttttcgaacccttttggatgcacatattctgctgagtgc-tgatcgtcatttcaactaggtcaaatgattacaaaagacatttgcattgagatgttgcaaaataagttgatcatcattattttaaaagactaaaaggtaaataaactcattttctttctttctatgctccttgtag

upper sequence: AT1G44900.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv01s0150g00390.t01 (Vitis vinifera), 5'ss of exon 6
AGTTTTGGGGCCTTTCTTCCAAAACTCTTATTCAGAAGTCAAGGTCGGTTCTTGTTCTGAATGCCAGTCAAAAGGACCGTTTACTGTTAATGTCGAACAGgtaggattctgtaatctctctat-cattattttcctttaactctacgaacttcaatgtaagttattggaatgtgaaattgaccatact-gttaattactcccttgtttcag
  || ||||||| |||||||| || || ||||||||||||||||| || |||||  | |||||||| ||||||||||| || ||||| ||| |||| |||||    || |  ||| | | | |  ||    || ||||   |     |||        ||  |  | |||    || |||    | || ||| ||  |||  | |      
GATTCTGGGGCCATTCTTCCAGAATTCATATTCAGAAGTCAAGGTTGGGTCTTGCCCAGAATGCCAATCAAAAGGACCATTCACTGTCAATATCGAGCAGgtgaagtttttcaatttgtgtttatatctcatttcttttgttactgaaaccaagggacaaactgatagaa----aagttg--tgtcctagttgatgtctctttggc-----
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116375881|gb|EG418473.1|EG418473
EST:     CTTGTTCTGAATGCCAGTCAAAAGGACCGTTTACTGTTAATGTCGAACAG                         ACAATATACAGGAACTATCAGAAGCTTACAATCCAAGAGAGTCCAGGAACA
genomic: CTTGTTCTGAATGCCAGTCAAAAGGACCGTTTACTGTTAATGTCGAACAGgtaggattct ... cttgtttcagACAATATACAGGAACTATCAGAAGCTTACAATCCAAGAGAGTCCAGGAACA
EST: gi|125138242|gb|EL177723.1|EL177723
EST:     CTTGTTCTGAATGCCAGTCAAAAGGACCGTTTACTGTTAATGTCGAACAG                         ACAATATACAGGAACTATCAGAAGCTTACAA
genomic: CTTGTTCTGAATGCCAGTCAAAAGGACCGTTTACTGTTAATGTCGAACAGgtaggattct ... cttgtttcagACAATATACAGGAACTATCAGAAGCTTACAA
EST: gi|116375882|gb|EG418474.1|EG418474
EST:     CTTGTTCTGAATGCCAGTCAAAAGGACCGTTTACTGTTAATGTCGAACAG                         ACAATATACAGGAACTATCAGAAGCTTACAATCCAAGAGAGTCCAGGAACA
genomic: CTTGTTCTGAATGCCAGTCAAAAGGACCGTTTACTGTTAATGTCGAACAGgtaggattct ... cttgtttcagACAATATACAGGAACTATCAGAAGCTTACAATCCAAGAGAGTCCAGGAACA