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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACGGGAAACCAGGATGTGTACGGAATACATGTGCGCATAGAGCATGTCCTCTTGATCTTGGCACAGTGAACGAGGGACGTATTCAATGTCCGTACCATGgttagtaactctttctttagtctacaatgttgataacaagtgagaaaccatatcttattaaatgtgattttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G44446.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA14G23860.2 (Glycine max), 5'ss of exon 5
GACGGGAAACCAGGATGTGTACGGAATACATGTGCGCATAGAGCATGTCCTCTTGATCTTGGCACAGTGAACGAGGGACGTATTCAATGTCCGTACCATGgttagtaactctttctttagtctacaatgttgataacaagtgagaaaccatatcttattaaatgtgattttgtag-----------------------------------------------------------------------------------
|| ||||| || |||||||| | ||| || ||||| ||  |||| ||||||||  | |||||  |||| |||||||| ||||| |||||||| ||||||||||||||     |     |    |  ||||   || |||   |  |     |  |  | | |  ||||  ||||                                                                                    
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACACCGAGCCTGTCCTCTGCACCTTGGTTCAGTAAACGAGGGTCGTATCCAATGTCCCTACCATGgttagtagtcactgaaacaaatgattatgtcc-tagcaatgaattatatgcacttcttgatacttgataatgtatgtgtaatttcacatgacatagcctacagatttatgtacactggaattgacgtactctaaaatttcaaaatggttggatatcag

upper sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G03430.1 (Glycine max), 5'ss of exon 5
GACGGGAAACCAGGATGTGTACGGAATACATGTGCGCATAGAGCATGTCCTCTTGATCTTGGCACAGTGAACGAGGGACGTATTCAATGTCCGTACCATGgttagtaactctttctttagtctacaatg--ttgataacaagtgagaaaccatatcttat-------taaatgtgattttgtag--------------------------------------------------------------------
|| ||||| || |||||||| | ||| || ||||| |||||||| || |||||  | |||||  |||| || ||||| ||||| |||||||| |||||||||||||            |    |  ||   ||   ||  ||| | |    ||   | ||       ||  ||| ||||   |                                                                     
GATGGGAAGCCTGGATGTGTGCAGAACACCTGTGCACATAGAGCCTGCCCTCTGCACCTTGGTTCAGTAAATGAGGGTCGTATCCAATGTCCCTACCATGgttagttgtcaccaaaacaaatgattatatcttagcaatgagttaaatgtaattgttgatgctaatgtaggtgtaatttcacattacacaacctacagatttatgtacactgaaattgacatactctaaaatttcaaatggttggatatcag

upper sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA04G42840.1 (Glycine max), 5'ss of exon 5
GACGGGAAACCAGGATGTGTACGGAATACATGTGCGCATAGAGCATGTCCTCTTGATCTTGGCACAGTGAACGAGGGACGTATTCAATGTCCGTACCATGgttagtaactctttctttagtctacaatgttgataacaagtgagaaaccatatcttattaaatg-tgattttgtag-------------------------
|| ||||| || || ||||| | ||| || ||||| || ||||||||||||||  | |||||  | ||||| ||||| ||||| ||||| || ||||||||||||||  |  |   | |     |  |      |||    |  ||    |   | | || ||| | || |  |||                         
GATGGGAAGCCTGGGTGTGTTCAGAACACCTGTGCACACAGAGCATGTCCTCTACACCTTGGTTCGGTGAATGAGGGTCGTATCCAATGCCCTTACCATGgttagtagttggtgaatgatgactctttac-accaacttaaggaaatttttgcttcaatacatgattatatcctagcaatgagttatatgcactggttcat

upper sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G11920.1 (Glycine max), 5'ss of exon 5
GACGGGAAACCAGGATGTGTACGGAATACATGTGCGCATAGAGCATGTCCTCTTGATCTTGGCACAGTGAACGAGGGACGTATTCAATGTCCGTACCATGgttagtaactctttctttagtctacaatgttgataacaagtga-gaaaccatatcttattaaatgtgattttgtag--------------------------------------------------------------------------------------------------------------
|| ||||| || |||||||| |  ||||| || || || |||||||| |||||  | |||||  | ||||| ||||| ||||| |||||||| ||||||||||||||     |   | | |    | | || |   ||| | | | ||   | |  |   | |  ||||      |                                                                                                              
GATGGGAAGCCTGGATGTGTTCAAAATACCTGCGCACACAGAGCATGCCCTCTGCACCTTGGTTCTGTGAAGGAGGGTCGTATCCAATGTCCTTACCATGgttagtag----tcagtgaatgatgactcttaactccaacttatggaattttctgctccaatacatgatagcaatgagttatatgcactggtagatacacatacatgaaaatatatcctagcaatgagttatatgctatacgcattaaaacatacaggttaaaaatatctaatggttggatgttag

upper sequence: AT1G44446.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv18s0001g02700.t01 (Vitis vinifera), 5'ss of exon 4
GACGGGAAACCAGGATGTGTACGGAATACATGTGCGCATAGAGCATGTCCTCTTGATCTTGGCACAGTGAACGAGGGACGTATTCAATGTCCGTACCATGgttagtaactctttctttagtctac--aatgttga------taacaagtgagaaaccatatcttattaaatgtgattttgtag------------------------------------------------------
|| |||||||| |||||||| || || || || || ||||||||||| |||||| |||||||  |||| |||||||| ||||| |||||||| |||||||||||||||          |    |   || ||| |      |  | | | ||||   ||  |  || || |   | |   ||                                                       
GATGGGAAACCTGGATGTGTCCGTAACACCTGCGCCCATAGAGCATGCCCTCTTCATCTTGGATCAGTAAACGAGGGTCGTATCCAATGTCCTTACCATGgttagtaagagggaaaggaaataagcaaaagtttacctgttttgctaataagaacagatgacaaatcaattagtaatgcataaagtaaaaaatatttgtttgctcatgtggaaatttttgtgatggatgaacttcag