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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGAACGGTTACCATCACCGTACTGAGCTTAACAAGAAGATTTACAGGTTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAGgtcagtagaaatttctctgtttcgtttcttttctcctgtctggtcatgattacttctgtggtttatctgagtctgatgataatgttttgtgtatgatgatatag

Basic information

species Arabidopsis thaliana
transcript AT1G43170.7
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G43170.7 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G361049_T01 (Zea mays), 5'ss of exon 11
GTCAGAACGGTTACCATCACCGTACTGAGCTTAACAAGAAGATTTACAGGTTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAGgtcagtagaaatttctctgtttcgtttcttttctcctgtctggtcatgattacttctgtggtttatctgagtctgatgataatgttttgtgtatgatgatatag
|||||||||| ||||||||||| |||||| | ||||||||| |||||| | | || ||||  ||    ||    ||    |||   ||||| | ||||||||       |  ||| |||   |  |    || | |    |  | | | || || ||   |||| |    |   | || | |                      
GTCAGAACGGATACCATCACCGCACTGAGATGAACAAGAAGGTTTACAAGATTGGCAAGGCCGGACAGGAAAGCCATGACGCCTCAACTGAGTTTGACAGgtatccttga--ttcactgcagcagtaacattgttcacaatcttga-gtttgctccttcagtttctgaatgctggttgtttacag-------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|163971331|gb|ES024603.1|ES024603
EST:     GCCATGACTGAATATGACAG                         GACTGAGAAGGATGTGACTCCAATGGGAGGATTCCCCCACTACGGTATTGT
genomic: GCCATGACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
EST: gi|124758864|gb|EH848994.1|EH848994
EST:     CACACACAGCCATGACTGAATATGACAG                         GACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
genomic: CACACACAGCCATGACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
EST: gi|125325374|gb|EL339454.1|EL339454
EST:     TGAATAATGACAG                         GACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTG
genomic: TGAAT-ATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTG
EST: gi|124767108|gb|EH857238.1|EH857238
EST:     GGTACTGAGGCACACACAGCCATGACTGAATATGACAG                         GACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
genomic: GGTACTGAGGCACACACAGCCATGACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
EST: gi|164218267|gb|ES135883.1|ES135883
EST:     AAGGTTGGTACTGAGGCACACACTGCCATGACTGAATATGACAG                         GACTGAGAAGGATGTGACTCCAATGGGAG
genomic: AAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGGAG
EST: gi|164153408|gb|ES022089.1|ES022089
EST:     GCCATGACTGAATATGACAG                         GACTGAGAAGGATGTGACTCCAATGGGAGGATTCCCCCACTACGGTATTGT
genomic: GCCATGACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
EST: gi|125212203|gb|EL227157.1|EL227157
EST:     ACACACAGCCATGACTGAATATGACAG                         GACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
genomic: ACACACAGCCATGACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
EST: gi|125130277|gb|EL173577.1|EL173577
EST:     ACTGAATATGACAG                         GACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
genomic: ACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
EST: gi|124823596|gb|EH908462.1|EH908462
EST:     GGTACTGAGGCACACACAGCCATGTACTGAATATGACAG                         GACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
genomic: GGTACTGAGGCACACACAGCCATG-ACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
EST: gi|124773995|gb|EH864124.1|EH864124
EST:     TTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAG                         GACTGAGAAGGATGTGACTCCAATGGG
genomic: TTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGG
EST: gi|164172191|gb|EL971871.1|EL971871
EST:     GAATATGACAG                         GACTGAGAAGGATGTGACTCCAATGGGAGGATTCCCCCACTACGGTATTGT
genomic: GAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
EST: gi|124960136|gb|EL034825.1|EL034825
EST:     TTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAG                         GACTGAGAAGGA
genomic: TTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGA
EST: gi|125322359|gb|EL336444.1|EL336444
EST:     TTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAG                         GACTGAGAAGGATGTGACTCCA
genomic: TTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCA
EST: gi|125045527|gb|EL117796.1|EL117796
EST:     TGACTGAATATGACAG                         GACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
genomic: TGACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTACGGTATTGT
EST: gi|124877042|gb|EH956479.1|EH956479
EST:     TTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAG                         GACTGAGAAGGATGTGACTCCAATGGGAGGCTT
genomic: TTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTT
EST: gi|125045568|gb|EL117837.1|EL117837
EST:     TTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAG                         GACTGAGAAGGATGTGACTCCAATGGGAGG
genomic: TTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGG
EST: gi|124945528|gb|EL021526.1|EL021526
EST:     TTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAG                         GACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTAC
genomic: TTGGGTAAGGTTGGTACTGAGGCACACACAGCCATGACTGAATATGACAGgtcagtagaa ... gatgatatagGACTGAGAAGGATGTGACTCCAATGGGAGGCTTCCCACACTAC