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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAGgtatggctgcttaactatatctcttgatcgaagcttagctgagttcttatctggttactttactagagaatttaaagtagtaatgcattgcttttctttacatttcattttttctaattttttttttgtatag

Basic information

species Arabidopsis thaliana
transcript AT1G36160.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os10g21910.1 (Oryza sativa), 5'ss of exon 4
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAGgt-atggctgctta-actatatctcttgatcgaagcttagctgagttcttatctggttac-tttactagagaatttaaagtagtaatgcattgcttttctttacatttcattttttctaattttttttttgtatag
|| ||||||||||||||||| || || || || |||||||||||||| || ||||| |||||||| ||||| || |||||||| || || ||||| |   |  |||  |  | ||  |||   |     |||  ||   | || |    ||   |  || |   ||  |    ||   ||  || | |     |||                                 
GTACATAATGATGATGAGGTGAGAGCACTGTTTAAGCAAGTTCAGGGAGAAGTCCCTGGCTCACCTATATTTATTATGAAGGTGGCATCTCAGgtgagaacaacttggagcacattgcttttcc----tttatttgttctgttgtgcatttgtatccaccatttaacatgc--tatccatatatagatgcctgttaagg------------------------------

upper sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os05g22940.1 (Oryza sativa), 5'ss of exon 8
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAGgtatggctgcttaactatatctcttgatcgaagcttagctgagttcttatctggttactttactagagaatttaaagtagtaatgcattgcttttctttacatttcattttttctaattttttttttgtatag
|||||||||||||||||||||||| |  |||| ||||||||||| || || || || || || |||||||| || |||| | | ||  | |||||  |||   |||                | |  |||      |||   |   |||   ||| |   || || |   | || |||   ||  | | || |  | | | || ||  ||                
GTTCATAATGATGATGAGGTTAGGACATTATTTAAGCAAGTTCAAGGCGAAGTACCTGGTTCCCCAATATTTATCATGAGGCTAGCTGCTCAGgtggggcctttta---------------tggaagttacaccttttcccttaatgttgagttattccggagtt-attatggttatgttctgtatgt-ttgatctgtaaattattgaaa----------------

upper sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G377341_T02 (Zea mays), 5'ss of exon 4
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAGgt-atggctgctt----aactatatctcttg-------atcgaagcttagctgagttcttatctggttactttactagagaatttaaagtagtaatgcattgcttttctttacatttcattttttctaattttttttttgtatag
|||||||| ||||||||||| ||||| || |||||||||||||| || || ||||| |||||||| ||||| || ||||| || || || ||||| |   ||| ||     | | | || ||||        |||    | |||     |||    | |||  ||   |   ||       |  |||||  ||   | ||| | | |   ||||  ||||  || ||| ||||||   
GTTCATAACGATGATGAGGTGAGGGCGCTGTTCAAGCAAGTTCAAGGAGAAGTCCCTGGCTCACCTATATTTATTATGAAAGTGGCATCTCAGgtgagaactgattcaaagattgtttcccttgttttcatgtcggctttgagcctgactctacctttgttctttgtatcatgagcgcttcggtgtaatatatatttgttcctgaaag--cattcattctg-ttctttctttgtag--

upper sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: AC197672.3_FGT002 (Zea mays), 5'ss of exon 6
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAGgtatggctgcttaactatatctcttgatcgaagcttagctgagttcttatctggttactttactagagaatttaaagtagtaatgcattgcttttctttacatttcattttttctaattttttttttgtatag
||||||||||||||||||||||| || || || |||||||| || ||||| ||||| ||||| |||||||| || |||| | |||| || ||||| | | |  ||  || | | |||     | |  |||    | | | |  ||  ||  | |  || ||   |||   | ||| |   | |    |||  | |    |||                        
GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTATCATGAGGCTTGCATCCCAGgt-tagttttttttctttctttct-----ggaatttat---aatccatccctttttgttcttttaaag---ttatccttgtattttctggaacatctg-atacgctattgaaa--------------------

upper sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM5G858094_T01 (Zea mays), 5'ss of exon 6
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAGgtatggctgcttaactatatctcttgatcgaagcttagctgagttcttatctggttactttactagagaatttaaagtagtaatgcattgcttttctttacatttcattttttctaattttttttttgtatag
||||||||||||||||||||||| || || || |||||||| || ||||| ||||| ||||| ||||||||  | |||| | |||| || ||||| | | |  ||     | | || |    |||  |||  |   | | || ||  | || ||                |||| |  | |   ||||||  |   |||||     || ||   || ||   |   
GTTCATAATGATGATGAGGTTAGAGCGCTGTTTAAGCAAGTACAAGGTGAAGTCCCTGGCTCCCCAATATTTGTCATGAGGCTTGCATCCCAGgt-tagtttttt-----tttttcctttctgaaatttatat---tccataccttttcacctt----------------tagttacccttgtattttctggaagcttcat-----ctgatgcattattgaca---

upper sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA04G11550.1 (Glycine max), 5'ss of exon 4
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAGgtatggctgcttaactatatctcttgatcgaagcttagctgagttcttatctggttactttacta-gagaatttaaagtagtaatgcattgcttttctttacatttcattttttctaattttttttttgtatag
|||||||||||||||||||| |||||  | |||||||||||||| ||||| || ||||| || || ||||| |||||||||||||| || ||||| | | |  |  |||  |||| ||||||  |    |  ||| |  |    |  |     || |  ||  || |    |  |  |   | |                                           
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCAGGTTCTCCCATATTTATAATGAAGGTTGCATCCCAGgt-tagataatccactg-atct-ttgatctgaatgaacttgattcttggagtcatggtcgtattctgattatctcttttgtttctaagtag-------------------------------------------

upper sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G11120.1 (Glycine max), 5'ss of exon 4
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAGgtatggctgcttaactatatctcttgatcgaagcttagctgagttcttatctggttactttacta-gagaatttaaagtagtaatgcattgcttttctttacatttcattttttctaattttttttttgtatag
|||||||||||||||||||| |||||  | |||||||||||||| ||||| || || || ||||| ||||| |||||||||||||| || ||||| | | |  |  |||  |||| | ||||  |    |  ||| |  |    |  |     || |  ||  || ||   |  |  |   | |                                           
GTTCATAATGATGATGAGGTAAGGGCATTGTTCAAGCAAGTTCAAGGTGAAGTTCCGGGTTCACCCATATTTATAATGAAGGTTGCATCCCAGgt-tagataatccactg-atctat-gatctgaatgaacatgattcttggagtcatggtcgtattctgattatctattttgtttctaagtag-------------------------------------------

upper sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv18s0001g04980.t01 (Vitis vinifera), 5'ss of exon 5
GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAGgtatggctgcttaactatatctcttgatcgaa-gcttagctgagttcttatctggttactttactagagaatttaaagtagtaatgcattgcttttctttacatttcattttttctaattttttttttgtatag
||||||||||||||||| || | |||| | |||||||||||||| ||||| || || ||||| || |||||||  ||||||||||| || |||||     |   || ||    ||||   | ||| ||| |||    |   | ||  ||| ||  | |  |    |||   |   ||| | ||   |||||| | | |                             
GTTCATAATGATGATGAAGTCAAGGCTTTGTTCAAGCAAGTTCAAGGTGAAGTTCCTGGCTCCCCCATATTCACGATGAAGGTTGCTTCCCAGgtgatattatcta-ctgcg-ctctgatttgaatgctgagccttttagatttccagttgctggagtttacttcttattctgacaattcgtttggtttcttcaaactag---------------------------

upper sequence: AT1G36160.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S13_171V6.1 (Physcomitrella patens), 5'ss of exon 4
-------GTTCATAATGATGATGAGGTTAGGGCTCTATTCAAGCAAGTTCAGGGTGAGGTCCCAGGCTCACCAATATTCATAATGAAGGTTGCGTCACAGgtatggctgcttaactatatctcttgatcgaagcttagctgagttcttatctggttactttactagagaatttaaagtagtaatgcattgcttttctttacatttcattttttctaattttttttttgtatag
       || ||||| ||||| || || | |||| | |||||||| || ||||| || || ||||| |||||||| |||||||||||||| ||  ||||||||| |    |  ||    ||| ||| | ||  | | | |  |   |||  | | |  |||   |        |   |   ||   |     |  | || |||       || |                   
TCGGAAAGTACATAACGATGAAGAAGTGAAGGCTTTGTTCAAGCAGGTGCAGGGAGAAGTGCCAGGTTCACCAATCTTCATAATGAAGGTCGCCACACAGgtattgta--tggacgtggtcttttgcttgat-catcgttaggagattagttagattgtttgggactccccaaacgatcacaacttacaatctgccctttcatggtggaattgcag-----------------