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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGTCAATTTAGGTATGCTTGTTACAACACTTGCGAGATATCAATCAAGACCAAGGATTTACATTGGATGCATGAAGTCTGGTCCTGTTCTTTCACAAAAgtaagcttctttacaaaaaatttgaaacctttggataaaaatctgaactaaagtaaggatttttggaaatgtatag

Basic information

species Arabidopsis thaliana
transcript AT1G33430.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G33430.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA12G00530.1 (Glycine max), 5'ss of exon 5
ATGTCAATTTAGGTATGCTTGTTACAACACTTGCGAGATATCAATCAAGACCAAGGATTTACATTGGATGCATGAAGTCTGGTCCTGTTCTTTCACAAAAgtaagcttctttacaaaaaatttgaaacctttggataaaaatctgaactaaagtaaggatttttggaaatgtatag----------------------
            ||||| | || |  |||||||| |  || | ||||||||| |||||||| ||||| |||||||| |||||||||||||| |  ||||||| || ||  |    ||  | |       | | ||   |||| | ||      |  | |  |   | ||| | |                        
------------GTATGTTAGTGAGTACACTTGCTAAGTACCGATCAAGACCCAGGATTTATATTGGTTGCATGAAATCTGGTCCTGTTCTATATCAAAAgtgaggtttctctttaattagtcattcattgttgaaggaaatattaatgttgttttgtaaatgaagtaatatctcattttaatttgtgtgtgtggcag

upper sequence: AT1G33430.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G36830.1 (Glycine max), 5'ss of exon 5
ATGTCAATTTAGGTATGCTTGTTACAACACTTGCGAGATATCAATCAAGACCAAGGATTTACATTGGATGCATGAAGTCTGGTCCTGTTCTTTCACAAAAgtaag-cttctttacaaaaaatttgaaacctttggataaaa-atctg-----------aactaaagtaaggatttttggaaatgtatag-------
            ||||||| || |  |||||||| |  || | ||||||||| ||| |||| ||||| |||||||| |||||||||||||| |  ||||||| ||  |||| |   | || |     |   ||| |  ||  || |             | | ||||||     |||  |   || |         
------------GTATGCTAGTGAGTACACTTGCCAAGTACCGATCAAGACCCAGGGTTTATATTGGTTGCATGAAATCTGGTCCTGTTCTATATCAAAAgtgaggtttctctttgataagtcattcattgttgaaggaattatttatgttcttttgtgaatcaagtaatctcattttaactagtgtgagtggcag

upper sequence: AT1G33430.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv18s0089g01040.t01 (Vitis vinifera), 5'ss of exon 5
ATGTCAATTTAGGTATGCTTGTTACAACACTTGCGAGATATCAATCAAGACCAAGGATTTACATTGGATGCATGAAGTCTGGTCCTGTTCTTTCACAAAAgtaagcttcttt-----acaaaaaatttgaaacct-----ttggataaaa------atctgaactaaagtaaggatttttggaaatgtatag--------
            ||||||| || | ||||||||| || |||   |  | ||| ||||| |||||||||||||||||||| || || ||||| || ||||||| ||||| |||     |     ||||| ||   |     ||||||| ||      |   | |||| | || |  |  ||| |   ||||          
------------GTATGCTAGTGAGAACACTTGCAAGGTATAGGTACAAACCTAGGATCTACATTGGATGCATGAAGTCAGGACCAGTTCTCTCTCAAAAgtgagctttttttttttattctgaatttaaattttcaatattggatagaataattaaatggtactagaatatgattgattgaagtggtatgaataattta