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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATCCTGTGAAAGTTTTACCATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCCTAGGgtgagattttcctctactatgcaaagtttctgatggttagcgactgaggaaaatgatttagtcttgtctatgcag

Basic information

species Arabidopsis thaliana
transcript AT1G32790.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G32790.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv02s0025g02740.t01 (Vitis vinifera), 5'ss of exon 6
TGCTCTAAATTTATCGGGGACTATGTTGGGATTCTATCCTGTGAAAGTTTTACCATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCCTAGGgtgagattttcctctactatgcaaagtttctgatggttagcgactgaggaa-aatgatttagtcttgtctatgcag--------------------------------
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TGCTTTGAGTCTGGCAGGGACAATGCTTGGATACTACCCTGTGAGGGTGCTGCCATCTAAAACAGCCATTGCACCAGTTAACCCTACATTTTTGCCTAGGgtgagaaactttgccattatg-atcgttttcattttccaaaatttgaaaattggagttttggtgaagtttctctcctaataacatgatgttggtactttggacttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86051671|gb|DR347426.1|DR347426
EST:     TACCATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCCTAGG                         ACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGTACTAACATA
genomic: TACCATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCCTAGGgtgagatttt ... gtctatgcagACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGTACTAACATA
EST: gi|86081011|gb|DR376768.1|DR376768
EST:     TACCATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCCTAGG                         ACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGTACTAACATA
genomic: TACCATCCAAAACAGCTATAGCACCGGTTAACCCGACATTTTTGCCTAGGgtgagatttt ... gtctatgcagACTGAAGATGAGCGTGAGATGTGTGCAAGAACTATCTACTGTACTAACATA