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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCCTTCTGACAGGACTGGAAACTTCGATACGATATATAATTTCCTTAGAGAGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaagcacaagttcagactatcattgaaaatcaagaacaaactatctttgaaagataaatatccctgcggaagtgtttgtagactgttgtatggcaatagaaacatgtcatctttaaaaactcttaatgatgtcttgtttactcgcag

Basic information

species Arabidopsis thaliana
transcript AT1G32400.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116422549|gb|EG465141.1|EG465141
EST:     AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAG                         GCTTTACTCTTCTTGCTTGCCCT
genomic: AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaa ... ttactcgcagGCTTTACTCTTCTTGCTTGCCCT
EST: gi|125173014|gb|EL194864.1|EL194864
EST:     AGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAG                         GCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAGCTAATACACCAGCA
genomic: AGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaa ... ttactcgcagGCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAGCTAATACACCAGCA
EST: gi|116457758|gb|EG500350.1|EG500350
EST:     AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAG                         GCTTTACTCTTCTTGCTT
genomic: AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaa ... ttactcgcagGCTTTACTCTTCTTGCTT
EST: gi|125188412|gb|EL203366.1|EL203366
EST:     AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAG                         GCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGG
genomic: AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaa ... ttactcgcagGCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGG
EST: gi|116422550|gb|EG465142.1|EG465142
EST:     AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAG                         GCTTTACTCTTCTTGCTT
genomic: AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaa ... ttactcgcagGCTTTACTCTTCTTGCTT
EST: gi|125283421|gb|EL297506.1|EL297506
EST:     GATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAG                         GCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAG
genomic: GATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaa ... ttactcgcagGCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAG
EST: gi|164032252|gb|ES153953.1|ES153953
EST:     AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAG                         GCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAGC
genomic: AGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaa ... ttactcgcagGCTTTACTCTTCTTGCTTGCCCTTATGGTCAGGGCAGC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TCCTTCTGACAGGACTGGAAACTTCGATACGATATATAATTTCCTTAGAGAGAACTGGAAGATTGTAAGATGGGTAGCTCTAGGAGCAGTTGTTTTCGAGgtaatagcaagcacaagttcagactatcattgaaaatcaagaacaaactatctttgaaagataaatatccctgcggaagtgtttgtagactgttgtatggcaatagaaacatgtcatctttaaaaactcttaatgatgtcttgtttactcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCAG