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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTGGTGGAGTAGCCAGGGCACGTGCATTTGCTAAGAAATTATCTGATGCACCACTTGCCATTGTCGATAAAAGGCGTCACGGCCACAATGTCGCTGAGgtaaaaatttaaatttaccttcattttatcctttctacacgcaagttctcatgtgttgataatactctttcccacag

Basic information

species Arabidopsis thaliana
transcript AT1G32380.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G32380.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G06110.1 (Glycine max), 5'ss of exon 5
TGTTGGTGGAGTAGCCAGGGCACGTGCATTTGCTAAGAAATTATCTGATGCACCACTTGCCATTGTCGATAAAAGGCGTCACGGCCACAATGTCGCTGAGgtaaaaatttaaattta-ccttcattttatcctttctacac-gc--aagttctcatgtgttgataatac--tctttcccacag-----------------
||||||||| || || || || ||||| ||||| ||||||||||||||||||||  | || ||||| || |||||||| || || |||||||| |||||||||| |  |  ||   | | |     ||||||||   |  | ||   ||   |  | |  ||  | | |  ||| |   ||||                 
TGTTGGTGGTGTCGCAAGAGCTCGTGCTTTTGCAAAGAAATTATCTGATGCACCCTTAGCTATTGTAGACAAAAGGCGCCATGGACACAATGTTGCTGAGgtaatagctggaacaaaacatgtgcattatccttgacatgctgctgcagcatttttcttctggaattgctatctatgtaacagagtgtactttaaacaga

upper sequence: AT1G32380.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G16400.3 (Glycine max), 5'ss of exon 5
TGTTGGTGGAGTAGCCAGGGCACGTGCATTTGCTAAGAAATTATCTGATGCACCACTTGCCATTGTCGATAAAAGGCGTCACGGCCACAATGTCGCTGAGgtaaaaatt-taaatttaccttcattttatcctttctacacgcaagttctcatgtgttgataatactctttcccacag------------------------
||||||||| || || || |||||||| ||||| ||||||||||||||||||||  | || ||||| || || ||||| || || |||||||| |||||||||| ||    ||    | || |||| |||||||   |  | ||| |  |  | | ||  | ||  | |||  || ||                        
TGTTGGTGGTGTTGCAAGAGCACGTGCTTTTGCAAAGAAATTATCTGATGCACCTTTAGCTATTGTAGACAAGAGGCGCCATGGACACAATGTTGCTGAGgtaataacggcaacaaaatctgcattgtatccttgaaatgc-caaatctttctttttttttcat-ttatttaacagagtacttttaaacagattttattggg

upper sequence: AT1G32380.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv02s0012g00530.t01 (Vitis vinifera), 5'ss of exon 5
TGTTGGTGGAGTAGCCAGGGCACGTGCATTTGCTAAGAAATTATCTGATGCACCACTTGCCATTGTCGATAAAAGGCGTCACGGCCACAATGTCGCTGAGgtaa-----aaatttaaattta-ccttcattttatcctttctacacgcaagttctcatgtgttgataatactctttcccacag-----------------
|||||| ||||| || || |||||||| ||||| ||||| || |||||||| ||  | ||||| || |||||||||||||| || || ||||| ||||||||||     | |   ||| | | ||| |||| | |  || | ||   |   ||    ||  ||| | |   | ||    | |                  
TGTTGGAGGAGTTGCAAGAGCACGTGCTTTTGCAAAGAAGTTGTCTGATGCGCCTTTAGCCATAGTGGATAAAAGGCGTCAAGGACATAATGTTGCTGAGgtaatttccacaccaaaactcagcctacattatctttttccaacttactcattggattgccttggttaacatattcattataatttttttcttttgtctt