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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAATGGACAGATGTCAAATTAACATCACCACAGCTCTCGAGAGAAAGCATGTATAAACTGTCACTGAATCATTTGACTCTTCAGTCTGTGTCTGCAAGgcaagatccgagagacttcttcagatgcgctgcatatttttttttttatctcgataatataagattttttttttcatatcaagacgtgtctgtgagatttcattttacaaatataagtgatggagcacttacactatttctttttttcttaaaaaataaacag

Basic information

species Arabidopsis thaliana
transcript AT1G31910.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G31910.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv02s0012g02530.t01 (Vitis vinifera), 5'ss of exon 3
AAATGGACAGATGTCAAATTAACATCACCACAGCTCTCGAGAGAAAGCATGTATAAACTGTCACTGAATCATTTGACTCTTCAGTCTGTGTCTGCAAGgcaagatccgagagacttcttcagatgcgctgcatatttttttttttatctcgataatataagattttttttttcatatcaagacgtgtctgtgagatttcattttacaaatataagtgatggagcacttacactatttctttttttcttaaaaaataaacag
  |||||||||||| ||||||||||| || |||||||| |||||||  ||||| ||| ||||||| ||  |||| |  || || | ||| ||| ||||||||| |         ||  |  | |||  |   | | || |||| ||  |  |||   |       |||  | ||| |       | | |   ||  |   |  |                                                         
GCATGGACAGATGTGAAATTAACATCTCCTCAGCTCTCCAGAGAAACTATGTACAAAATGTCACTAAAAAATTTAATGCTCCAATGTGTTTCTTCAAGgcaagtt---------tttgttggttgccttatgtttattgttttataatttaatatctttgatccatttagtgcatttacgtctctttttcaaagcctgtgtactttg------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|124868115|gb|EH952552.1|EH952552
EST:     ATGTATAAACTGTCACTGAATCATTTGACTCTTCAGTCTGTGTCTGCAAG                         TGATTCAAGAAACCCCTTT
genomic: ATGTATAAACTGTCACTGAATCATTTGACTCTTCAGTCTGTGTCTGCAAGgcaagatccg ... aaataaacagTGATTCAAGAAACCCCTTT
EST: gi|125218633|gb|EL232716.1|EL232716
EST:     TTTGACTCTTCAGTCTGTGTCTGCAAG                         TGATTCAAGAAACCCCTTTGTAGAGCATGCGATACAGTATGCTATAGCTGC
genomic: TTTGACTCTTCAGTCTGTGTCTGCAAGgcaagatccg ... aaataaacagTGATTCAAGAAACCCCTTTGTAGAGCATGCGATACAGTATGCTATAGCTGC
EST: gi|164130887|gb|EL984048.1|EL984048
EST:     GTCTGTGTCTACAAG                         TGATTCAAGAAACCCCTTTGTAGAGCATGCGATACAGTATGCTATAGCTGC
genomic: GTCTGTGTCTGCAAGgcaagatccg ... aaataaacagTGATTCAAGAAACCCCTTTGTAGAGCATGCGATACAGTATGCTATAGCTGC