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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGAGGATCCCATTTGGGTCATGAACGTTGTATCATCGTACAGCGCAAATTCGCTTCCTGTTGTCTTTGATCGCGGTCTCATCGGGACTTACCACGACTGgtaacatttctttttgtcaaaaacactctgttcattgtttgatctttgtgctattaacctgaaaaccgaaattgtag

Basic information

species Arabidopsis thaliana
transcript AT1G31850.2
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164164877|gb|ES005892.1|ES005892
EST:     TCGGGACTTACCACGACTG                         GTGCGAAGCTTTCTCGACGTATCCAAGAACATATGATCTTCTTCACCTCGA
genomic: TCGGGACTTACCACGACTGgtaacatttc ... gaaattgtagGTGCGAAGCTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCGA
EST: gi|86064121|gb|DR359878.1|DR359878
EST:     TCGCTTCCTGTTGTCTTTGATCGCGGTCTCATCGGGACTTACCACGACTG                         GTGCGAAGCTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCGA
genomic: TCGCTTCCTGTTGTCTTTGATCGCGGTCTCATCGGGACTTACCACGACTGgtaacatttc ... gaaattgtagGTGCGAAGCTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCGA
EST: gi|86064117|gb|DR359874.1|DR359874
EST:     TCGCTTCCTGTTGTCTTTGATCGCGGTCTCATCGGGACTTACCACGACTG                         GTGCGAAGCTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCGA
genomic: TCGCTTCCTGTTGTCTTTGATCGCGGTCTCATCGGGACTTACCACGACTGgtaacatttc ... gaaattgtagGTGCGAAGCTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCGA
EST: gi|86064120|gb|DR359877.1|DR359877
EST:     TCGCTTCCTGTTGTCTTTGATCGCGGTCTCATCGGGACTTACCACGACTG                         GTGCGAA-CGTTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCG
genomic: TCGCTTCCTGTTGTCTTTGATCGCGGTCTCATCGGGACTTACCACGACTGgtaacatttc ... gaaattgtagGTGCGAAGC-TTTCTCAACGTATCCAAGAACATATGATCTTCTTCACCTCG