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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACGGCTTCCTGGCTCTGTACTCTCTTTTGAAGATTGTGACATATCCGGAGTTCTAGTTCCATGGCTATATGTGGGAATGTGTTTTTCATCATTTTGTTGGgtaagtacactttcactctttgattttattataaacattttttctctaatgtttggatgtttgatgtgatatttctttgtcttgaacag

Basic information

species Arabidopsis thaliana
transcript AT1G30810.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30810.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G108589_T02 (Zea mays), 5'ss of exon 3
ACGGCTTCCTGGCTCTGTACTCTCTTTTGAAGATTGTGACATATCCGGAGTTCTAGTTCCATGGCTATATGTGGGAATGTGTTTTTCATCATTTTGTTGGgtaag-----ta--cactttcactctttgattttattataaa-cattttttctctaatgtttggatgtttgatgtgatatttctttgtcttgaacag---
|||| | || ||||||||   ||| |||||||||   || ||| | || ||| ||||||||||||| ||||| |||||||| || || |||||||| ||||||||     ||   | | |   ||     || | | |||||   |   | |  || |     ||  ||  ||  | | |   ||||     || |    
ACGGTTGCCAGGCTCTGTTACCTCATTTGAAGATGAGGATATACCTGGTGTTGTAGTTCCATGGCTTTATGTAGGAATGTGCTTCTCTTCATTTTGCTGGgtaaggttcttagctaatctgtttccacatttctctcataaaatgtagatcccttactcaaaagagattctattgggtttgaatttgaaaaaaaaaatgc

upper sequence: AT1G30810.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G09970.1 (Glycine max), 5'ss of exon 6
ACGGCTTCCTGGCTCTGTACTCTCTTTTGAAGATTGTGACATATCCGGAGTTCTAGTTCCATGGCTATATGTGGGAATGTGTTTTTCATCATTTTGTTGGgtaagt------acactttcactc---tttgattttattat----aaacattttttctctaatgtttggatgtttgatgtgatatttctttgtcttgaacag
 || || || || ||||||||   || |||||   |||||||||| ||||||||||| |||||||| ||||| || |||||||||||||||||||| |||||||||      | | ||| |  |   | | | ||||| ||     ||  | ||    |    | | | || || |   |   |||| ||| | |   |   
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGACATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtggtgagaaatttttatccaagtctaaatttatgattaaggaaagtgttgagacacgagatggaatattagtattaccatttttttttttgtcat--

upper sequence: AT1G30810.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G22050.1 (Glycine max), 5'ss of exon 6
ACGGCTTCCTGGCTCTGTACTCTCTTTTGAAGATTGTGACATATCCGGAGTTCTAGTTCCATGGCTATATGTGGGAATGTGTTTTTCATCATTTTGTTGGgtaagtacactttcactctttgattttattataaacattttttctct----aatgtttggatgtttgatgtgatatt------tctttgtcttgaacag---
 || || || || ||||||||   || |||||   |||| ||||| ||||||||||| |||||||| ||||| || |||||||||||||||||||| |||||||||    |   | | |||  |   | | ||||  | |  |        |  |||  ||  |  |||   |||||      | |||||| |||   |   
CCGACTGCCAGGTTCTGTACTAAGTTATGAAGGAAGTGATATATCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGTTTTTCATCATTTTGCTGGgtaagtga--tgagaattttttgtccaagtctaaatttatgattaagggaaagcgttaagacatgagatagaatattaccaattttttgtcatgacatgata

upper sequence: AT1G30810.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G30470.1 (Glycine max), 5'ss of exon 3
ACGGCTTCCTGGCTCTGTACTCTCTTTTGAAGATTGTGACATATCCGGAGTTCTAGTTCCATGGCTATATGTGGGAATGTGTTTTTCATCATTTTGTTGGgtaagtac----actttcactctttgatttta---ttata-aacattttttctctaatgtttggatgtttgatgtgatatttctttgtcttgaacag----
||| || || || ||||   | | ||||||||   |||| || || |||||| ||||||||||||| ||||| |||||||| ||||| |||||||| ||||||||||     | || || | | | | | ||    |||  || |       | ||| |  |  |    |||| | |    | ||  | || | ||     
ACGACTGCCAGGTTCTGCCTTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGgtaagtagtgagaattgcattttctcagtctaaatctatgcaagaaacaaagtttaaggcata-acagatgatattactaattttctttttaatcactttc

upper sequence: AT1G30810.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G13610.1 (Glycine max), 5'ss of exon 2
ACGGCTTCCTGGCTCTGTACTCTCTTTTGAAGATTGTGACATATCCGGAGTTCTAGTTCCATGGCTATATGTGGGAATGTGTTTTTCATCATTTTGTTGGgtaagtacactttcactctttgattttattataaacattttttc-tctaatgtttggatgtttgatgtgatatttctttgt-cttgaacag---------
 || ||  | || |||| | | | ||||||||   |||| || || |||||| ||||||||||||| ||||| |||||||| ||||| |||||||| |||||||||         ||  |  | |||| ||    ||  |     |  ||    || |     ||    | |        | |  | | ||         
GCGACTGTCAGGTTCTGCATTATGTTTTGAAGGAAGTGATATCTCAGGAGTTGTAGTTCCATGGCTGTATGTTGGAATGTGCTTTTCCTCATTTTGCTGGgtaagtgttaggaatcttctctactttactaattgcaactagaggtagaacagatgcacacaagaaccaacacaagacaatacacgcagagataaaggat

upper sequence: AT1G30810.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv10s0092g00210.t01 (Vitis vinifera), 5'ss of exon 6
ACGGCTTCCTGGCTCTGTACTCTCTTTTGAAGATTGTGACATATCCGGAGTTCTAGTTCCATGGCTATATGTGGGAATGTGTTTTTCATCATTTTGTTGGgtaagtacactttcactctttgatttta-ttataaac-attttttctctaatgtttggat-------gtttgatgtgatatttctttgt-cttgaacag--
 || || ||||| |||||||| | ||||||| |   ||| || || |||||||| || |||||||| ||||| || ||||| || |||||||||||||||||||||  |     | || |  ||   |  | || |  |   |      ||   ||  ||       |    | |    || || |||| ||| | |    
CCGACTGCCTGGTTCTGTACTTTGTTTTGAACAAAATGATATCTCAGGAGTTCTGGTCCCATGGCTCTATGTCGGGATGTGCTTCTCATCATTTTGTTGGgtaagt-tatgggaattcctctatcaaagctgtacatgacgctaaaaagaaaaattaaataaaaagggcaaaaggcagaatctcgttgttcttcagctttg