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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGATGCGAAAGGATACCTTACGGGAAGATGAGACTCGGTTTTATGTTGCGCAGACAATTCTGGCTATTGAGTCTATCCATAAGCATAATTACGTCCACAGgtttgaacaactggcatttgaagcttttcatattgttcttttttccatttttgcatcttacttgacatttactatcactagaatcatatcaagcttccggatttcctacagtgcttgtaaattagctttcagttgatacgtggtgataatttaactctagtttcttcctttgcttttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G30640.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30640.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv10s0003g05720.t01 (Vitis vinifera), 5'ss of exon 5
TGATGCGAAAGGATACCTTACGGGAAGATGAGACTCGGTTTTATGTTGCGCAGACAATTCTGGCTATTGAGTCTATCCATAAGCATAATTACGTCCACAGgtttgaacaactggcatttgaagcttttcatattgttcttttttccatttttgcatcttacttgacatttactatcactagaatcatatcaagcttccggatttcctacagtgcttgtaaattagctttcagttgatacgtggtgataatttaactctagtttcttcctttgcttttgtag
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TAATGCGCAAGGATACCTTGACTGAGGATGAGGCAAGGTTTTATGTTGGGCAGACAGTCCTTGCCATTGAGTCTATTCACAAGCACAACTACATCCACAGgtttac----------ttcacatctttttgtcccctttgtttatgagat---acgtgttaccaattggttagagctgttagactactatggtgat------attcctacagcatggttg--------------------------------------------------------------