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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGTATCGGACAAGGCCTAGTATTGGTATTTCTTTGTGGCTTATGTACATTCTTGACGACAATATCTTTGAGTGCTATTGCAACAAATGGTGCAATGAAGgtaattcttttttctgttatatcacctaaattttctttgaataaaactatgtaaccataattaaagatattcctccctctcttgggtctctgcctctctggtccataattgacaccccttattacttttctatttcttttgtgattgaacggtatttaagacatcaagtttattaataacttttgggttatctcag

Basic information

species Arabidopsis thaliana
transcript AT1G30450.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G30450.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G22520.1 (Glycine max), 5'ss of exon 3
TGGTATCGGACAAGGCCTAGTATTGGTATTTCTTTGTGGCTTATGTACATTCTTGACGACAATATCTTTGAGTGCTATTGCAACAAATGGTGCAATGAAGgtaattcttttttctgttatatcacctaaattttctttgaataaaactatgtaaccataattaaagatattcctccctctcttgggtctctgcctctctggtccataattgacaccccttattacttttctatttcttttgtgattgaacggtatttaagacatcaagtttattaataacttttgggttatctcag
||| || ||| |     |  |  | || | | | ||||||   ||||||||| | ||  ||||||| ||||||||||||||||| |||||||| |||||||||     | | |  || |  | | ||     || ||||  ||  ||||   |  | |  || || || |   |       ||  || |   | | | |      |                                                                                          
TGGCATAGGAGAGACATTGTTGCTTGTTTCTTTATGTGGCACTTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGTGCCATGAAGgtatgcactgtatgagtaagttgagcttttgcttatttgg-tatgactac--agtctt--ttcaaaatctgattgttaaaattaagtatac-cttatgtatcttct------------------------------------------------------------------------------------------

upper sequence: AT1G30450.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G10390.1 (Glycine max), 5'ss of exon 4
TGGTATCGGACAAGGCCTAGTATTGGTATTTCTTTGTGGCTTATGTACATTCTTGACGACAATATCTTTGAGTGCTATTGCAACAAATGGTGCAATGAAGgtaattcttttttctgttatatcacctaaattttctttgaataaaactatgtaaccataattaaagatattcctccctctcttgggtctctgcctctctggtccataattgacaccccttattacttttctatttcttttgtgattgaacggtatttaagacatcaagtttattaataacttttgggttatctcag
||| || ||| |     |  |  | || | | | ||||||   ||||||||| | ||  ||||||| ||||||||||||||||| ||||| || |||||||||    || | |  || |  | | |||    || ||||  ||  ||||        |  | |||        ||    | ||     |  |  |  ||  | | ||                                                                                         
TGGCATAGGAGAGACATTGCTGCTTGTTTCTTTATGTGGCACTTGTACATTCCTTACTTCAATATCATTGAGTGCTATTGCAACCAATGGAGCCATGAAGgtatgcattgtatgagtaagttgagctattgcttatttgg-tatgactacagtcttcttttcaaaa-------tctgattgttaaaattaagtataccttatacgtat----------------------------------------------------------------------------------------

upper sequence: AT1G30450.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv10s0003g04530.t01 (Vitis vinifera), 5'ss of exon 5
TGGTATCGGACAAGGCCTAGTATTGGTATTTCTTTGTGGCTTATGTACATTCTTGACGACAATATCTTTGAGTGCTATTGCAACAAATGGTGCAATGAAGgta-attcttttttctgttatatcacctaaattttctttgaataaaactatgtaaccataattaaagatattcctccctctcttgggtctctgcctctctggtccataattgacaccccttattacttttctatttcttttgtgattgaacggtatttaagacatcaagtttattaataacttttgggttatctcag
 || || || ||    ||  |  |||| |   ||||||| || ||||| ||| ||||  | ||||| ||||||||||| ||||| |||||||||||||||||| | |   || | | || | | | | |   |   |    || | |  || |  |  | ||||    | ||   || |     | |     || | | |                                                                                                 
AGGCATTGGTCAGTCGCTTTTGCTGGTGTCCTTTTGTGGTTTGTGTACTTTCCTGACTTCGATATCATTGAGTGCTATCGCAACTAATGGTGCAATGAAGgtagactggattctttattct-taagccactatcattgcttatgagatgatctttctgtgattattt-tcttaagccttaataagagaaaaggcttgtttac-----------------------------------------------------------------------------------------------