1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GATGATGATGTTGACCTTTTCGGAGAGGAGACCGAAGAGGAAAAGAAAGCTGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgggttttgttctacccttgtaatttatatgaatgatatgaagatgtcttggatttctcattgtttttattattcttcattag
species | Arabidopsis thaliana |
transcript | AT1G30230.2 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTCAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTGEST: gi|124825612|gb|EH910478.1|EH910478
genomic: GTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTG
EST: AGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATEST: gi|47831915|gb|CK121599.1|CK121599
genomic: AGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATAT
EST: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTGEST: gi|164221737|gb|ES048529.1|ES048529
genomic: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTG
EST: CAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTGEST: gi|164075517|gb|ES165380.1|ES165380
genomic: CAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTG
EST: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAATAAGGAAT CTGGAAAGTCCEST: gi|125125799|gb|EL171234.1|EL171234
genomic: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCC
EST: AGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGAEST: gi|116453708|gb|EG496300.1|EG496300
genomic: AGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGA
EST: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTGEST: gi|125119250|gb|EL167563.1|EL167563
genomic: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTG
EST: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGAEST: gi|125120930|gb|EL168394.1|EL168394
genomic: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGA
EST: GCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTAACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTEST: gi|164132777|gb|ES030810.1|ES030810
genomic: GCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTA-CAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTT
EST: CTGTCAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTGEST: gi|116453709|gb|EG496301.1|EG496301
genomic: CTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTG
EST: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTGEST: gi|86085521|gb|DR381280.1|DR381280
genomic: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTG
EST: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAMCCGTGGGATGATGAGACTGEST: gi|152037744|gb|BP796307.2|BP796307
genomic: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTG
EST: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTGEST: gi|152037721|gb|BP796075.2|BP796075
genomic: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTG
EST: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTGEST: gi|164040360|gb|ES134265.1|ES134265
genomic: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTG
EST: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGAEST: gi|116416034|gb|EG458626.1|EG458626
genomic: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGA
EST: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTGEST: gi|124747665|gb|EH837795.1|EH837795
genomic: TGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTG
EST: AGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATEST: gi|125275348|gb|EL289433.1|EL289433
genomic: AGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGAT
EST: TCTACAAAGAAGAAGGAAT CTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTG
genomic: TCTACAAAGAAGAAGGAATgtaagtttgg ... tcttcattagCTGGAAAGTCCTCAGTTTTGATTGATATCAAACCGTGGGATGATGAGACTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATGATGATGTTGACCTTTTCGGAGAGGAGACCGAAGAGGAAAAGAAAGCTGCTGAAGAGAGAGCAGCTTCTGTCAAGGCATCTACAAAGAAGAAGGAATgtaagtttgggttttgttctacccttgtaatttatatgaatgatatgaagatgtcttggatttctcattgtttttattattcttcattag
- - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA