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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCAACGTTATATCGATGTGTTTTGTTCCTATAACTTCACTCTTGAGCGGTCTCCCAGGAACAGGATTTCTTAGTCATGCAGTGAACTTATACCTCCGATgtgagtattttgttcttttttggcttttgtatcttaggtactcaacggttcattcaggtaacaaggttgtttaaaatgttgtag

Basic information

species Arabidopsis thaliana
transcript AT1G28380.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G28380.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv10s0003g00150.t01 (Vitis vinifera), 5'ss of exon 5
CCCAACGTTATATCGATGTGTTTTGTTCCTATAACTTCACTCTTGAGCGGTCTCCCAGGAACAGGATTTCTTAGTCATGCAGTGAACTTATACCTCCGATgtgagtat--tttgttcttttttggc--ttttgtatcttaggtactcaacggttcattcaggtaacaaggttgtttaaaatgt--tgtag----------
|| || || || || ||||  ||||| |||||||||||||||||||| ||| ||| ||| |  |||||||| || |||||| | ||  | ||||| ||||||||||||   |  | |||| ||| |  ||| || || |    ||| ||   |  | | | |   |    ||    | ||||   ||| |          
CCTAATGTCATCTCCATGTCCTTTGTGCCTATAACTTCACTCTTGAGTGGTGTCCGAGGCAGTGGATTTCTAAGCCATGCAATAAATCTGTACCTTCGATgtgagtatgcctcttactttattgccagtttggtttcattaagactgaagattgaagtgatgctgctgttttccccataatgagatgtggtaccattgga
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116397734|gb|EG440326.1|EG440326
EST:     TCTCCCAGGAACAGGATTTCTTAGTCATGCAGTGAACTTATACCTCCGAT                         ATAAGCCACCTATAGAAGAGTTGCATCAGTTTCTTGAGTTTCAACTTCCAC
genomic: TCTCCCAGGAACAGGATTTCTTAGTCATGCAGTGAACTTATACCTCCGATgtgagtattt ... aatgttgtagATAAGCCACCTATAGAAGAGTTGCATCAGTTTCTTGAGTTTCAACTTCCAC
EST: gi|301502602|gb|HO208142.1|HO208142
EST:     TCTCCCAGGAACAGGATTTCTTAGTCATGCAGTGAACTTATACCTCCGAT                         ATAAGCCACCTATAGAAGAGTTGCATCAGTTTCTTGAGTTTCAACTTCCAC
genomic: TCTCCCAGGAACAGGATTTCTTAGTCATGCAGTGAACTTATACCTCCGATgtgagtattt ... aatgttgtagATAAGCCACCTATAGAAGAGTTGCATCAGTTTCTTGAGTTTCAACTTCCAC