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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGTAGTAATTGCAGGGATTGTATGGAACCCTCCTACATCATGCGCgtatgttgattctccccttcttgtactaatataaccattttttagtaaagcagaatttgactaaagtgaagtgaccaagattatagattcatgcttatcgtaacattgagttatgaagtggtatttttttctattgcttcag

Basic information

species Arabidopsis thaliana
transcript AT1G28100.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G28100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA13G33920.1 (Glycine max), 5'ss of exon 5
CTTGTAGTAATTGCAGGGATTGTATGGAACCCTCCTACATCATGCGCgtatgttgattctccccttcttgtactaatataaccattttttagtaaagcagaatttgactaaagtgaagtgaccaagattatagattcatgcttatcgtaacattgagttatgaagtggtatttttttctattgcttcag
||||| |||||||||||  ||||||||||||  || ||||| ||||||||||||    |||   | ||  || |  | | || || |   | | || |    |    ||    | |  | |  ||   |  | | | ||        || ||                                     
CTTGTTGTAATTGCAGGACTTGTATGGAACCGCCCAACATCCTGCGCgtatgtt----ctcatttactaataattctttgactatatc--actgaaactttttcattcttccataatttaataaaatatggaaaataataggctgaatagcac------------------------------------

upper sequence: AT1G28100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv01s0244g00110.t01 (Vitis vinifera), 5'ss of exon 5
CTTGTAGTAATTGCAGGGATTGTATGGAACCCTCCTACATCATGCGCgtatgttgattctccccttcttgtactaatataaccattttttagtaaagcagaatttgactaaagtgaagtg--accaagattatagattcatgcttatcgtaacattgagttatgaagtggtatttttttctattgcttcag
|| || || ||||||||||| || |||||||| || ||||| ||||||||||||   |  |  ||  || |||| | || |  | |   ||||    |    |||   |  ||  |  ||   | | |    || |       | |  ||                                         
CTCGTGGTGATTGCAGGGATAGTGTGGAACCCACCAACATCTTGCGCgtatgtt---ttccttctggttctactcaaatgaatagtgaatagttttcccttttttaggtttagacacttgttgctaggccagtaaaagggccttgaaagt-----------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86043029|gb|DR338784.1|DR338784
EST:     CTTGTAGTAATTGCAGGGATTGTATGGAACCCTCCTACATCATGCGC                         ATGGGCCGCGAGGGTACTTGTGAACAGCGATGAGGCTTGTCATCACGGACG
genomic: CTTGTAGTAATTGCAGGGATTGTATGGAACCCTCCTACATCATGCGCgtatgttgat ... attgcttcagATGGGCCGCGAGGGTACTTGTGAACAGCGATGAGGCTTGTCATCACGGACG