1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAACCAAGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATCgtatgtcttcttttctattcgactgtttttacaacgtttgtttcttcattcacattgtgctgactctcgatttaattctatcttatgcag
species | Arabidopsis thaliana |
transcript | AT1G27400.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AGCCGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATC CTTACATGTCAAACCCATGCCACATTGAGTTGATTNTGTCAGAGAAAGAAGEST: gi|124740576|gb|EH831738.1|EH831738
genomic: AGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATCgtatgtcttc ... tcttatgcagCTTACATGTCAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAAGAAG
EST: AGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATC CTTACATGTCAAACCCATGCCACATTGAGTTGATTTTGTEST: gi|125039402|gb|EL111671.1|EL111671
genomic: AGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATCgtatgtcttc ... tcttatgcagCTTACATGTCAAACCCATGCCACATTGAGTTGATTTTGT
EST: TATCGTGCTCATGGAAGAATCAATC CTTACATGTCAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAAGAAGEST: gi|163998110|gb|ES013540.1|ES013540
genomic: TATCGTGCTCATGGAAGAATCAATCgtatgtcttc ... tcttatgcagCTTACATGTCAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAAGAAG
EST: AGCCGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATC CTTACATGTCAAACCCATGCCACATTGAGTTGAEST: gi|86074318|gb|DR370075.1|DR370075
genomic: AGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATCgtatgtcttc ... tcttatgcagCTTACATGTCAAACCCATGCCACATTGAGTTGA
EST: AGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATC CTTACATGTCAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAAGAAGEST: gi|116444090|gb|EG486682.1|EG486682
genomic: AGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATCgtatgtcttc ... tcttatgcagCTTACATGTCAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAAGAAG
EST: AGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATC CTTACATGTCAAACCCATGCCACATTGGGTTGATTTTGTCAGAGAAAGAAG
genomic: AGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATCgtatgtcttc ... tcttatgcagCTTACATGTCAAACCCATGCCACATTGAGTTGATTTTGTCAGAGAAAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAAGGTTTGGATGTCGATGCCCTTTTCATTTCTCACATCCAAGTGAACCAAGCAGCAAAACAGAGGAGAAGGACATATCGTGCTCATGGAAGAATCAATCgtatgtcttcttttctattcgactgtttttacaacgtttgtttcttcattcacattgtgctgactctcgatttaattctatcttatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA