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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGACTGGTAAGGCAGTTATGCTCGATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAGgtttccctttgtttgctttgggaatttcctattttcttagtgtctgttcttgagacttcatttaattagcaacctcactttgtgttagttacttcttccatgcatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G26260.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G26260.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA01G09400.1 (Glycine max), 5'ss of exon 5
GTGACTGGTAAGGCAGTTATGCTCGATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAGgtttccctttgtttgctttgggaatttcctattttcttagtgtctgttcttgagacttcatttaattagcaacctcactttgtgttagttacttcttcca-tgcatttcag--
|| ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||||| | ||  | ||||| |   |             |||   | ||| | | || || |      |||  ||| | | |  || |    |  |  ||| |    |  |||| | |   || | ||   
GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggat-------------gaaaagcttatctccctattgcccacatgtgattcttaagtcatgtaactgatttgccctgtatgttctggttctgcaagctcagtgcaaaa

upper sequence: AT1G26260.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G13860.1 (Glycine max), 5'ss of exon 6
GTGACTGGTAAGGCAGTTATGCTCGATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAGgtttccctttgtttgctttgggaatttcctattttcttagtgtctgttcttgagacttcatttaattagcaacctcactttgtgttagttacttcttccatgcatttcag
|| ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||||| | ||  | ||||| |   |       |||    |  | |||||||    | |     ||||| ||   |||| ||| |      | |  | | | ||  || || |||   | || | |  
GTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatgaaaaaactt----atctccctatttgtccacttgtgattcttaag---tcatgtaactgatttgcactgtatattttgatt-ctgcttaagttcagtac--

upper sequence: AT1G26260.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA02G13860.3 (Glycine max), 5'ss of exon 5
-------------------------------GTGACTGGTAAGGCAGTTATGCTCGATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAGgtttccctttgtttgctttgggaatttcctattttcttagtgtctgttcttgagacttcatttaattagcaacctcactttgtgttagttacttcttccatgcatttcag
                               || ||||| |||||||| ||||| ||||||||||| |||||||| || ||||||||| | ||  | ||||| |   |       |||    |  | |||||||    | |     ||||| ||   |||| ||| |      | |  | | | ||  || || |||   | || | |  
CATTGTTTATTATTACTTTCTATGCTTTTAGGTCACTGGCAAGGCAGTAATGCTAGATGAAATCATCAACTATGTACAGTCACTTCAACGACAGGTTGAGgtatggatgaaaaaactt----atctccctatttgtccacttgtgattcttaag---tcatgtaactgatttgcactgtatattttgatt-ctgcttaagttcagtac--

upper sequence: AT1G26260.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv01s0010g00740.t01 (Vitis vinifera), 5'ss of exon 5
GTGACTGGTAAGGCAGTTATGCTCGATGAAATCATTAACTATGTGCAATCACTTCAATGCCAAATCGAGgtttccctttgtttgctttgggaatttcctattttcttagtgtctgttcttgagacttcatttaatt-agcaacctcactttgtgttagttacttcttccatgcatttcag
|| ||||| ||||| || ||||| ||||||||||||||||||||||||||||||||| | ||  | ||||| |    ||       |  |   ||  || ||| ||   | |  |||||  |   || || |  || |        |   ||  |     |  ||| | |  |||     
GTCACTGGCAAGGCGGTCATGCTAGATGAAATCATTAACTATGTGCAATCACTTCAACGGCAGGTTGAGgtatggtattaaggatctatg---ttctctttttcctccctattggttctcaa---ttgatctggtttatttgttctatcctgcatcttaaatgtctccgaaacat-----