1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGAGTTAGCTAAAGATTTTGTTGTATCTGGAACTGCTTCAGAATCACTCTATGGAGCTTGTGAGGCAATGTACAAGCCAGATATGgtttgcccgctaacaacctcatcatctcttgttatatttctaaatcccgacaatgaaaatgcttaaattaccacatctaggcgttgcagtttggtaggtt...
species | Arabidopsis thaliana |
transcript | AT1G21720.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: CTTCAGAATCACTCTATGGAGCTTGTGAGGCAATGTACAAGCCAGATATG GAAGCTGAGGAATTGTTCGAGACAATATCGCAAGCACTTCTCTCATCTGTTEST: gi|124811214|gb|EH896080.1|EH896080
genomic: CTTCAGAATCACTCTATGGAGCTTGTGAGGCAATGTACAAGCCAGATATGgtttgcccgc ... ggattttcagGAAGCTGAGGAATTGTTCGAGACAATATCGCAAGCACTTCTCTCATCTGTT
EST: CAAGCCAGATATG GAAGCTGAGGAATTGTTCGAGACAATATCGCAAGCACTTCTCTCATEST: gi|124777885|gb|EH867828.1|EH867828
genomic: CAAGCCAGATATGgtttgcccgc ... ggattttcagGAAGCTGAGGAATTGTTCGAGACAATATCGCAAGCACTTCTCTCAT
EST: CTTCAGAATCACTCTATGGAGCTTGTGAGGCAATGTACAAGCCAGATATG GAAGCTGAGGAATTGTTCGAGACAATATCGCAAGCA
genomic: CTTCAGAATCACTCTATGGAGCTTGTGAGGCAATGTACAAGCCAGATATGgtttgcccgc ... ggattttcagGAAGCTGAGGAATTGTTCGAGACAATATCGCAAGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAGTTAGCTAAAGATTTTGTTGTATCTGGAACTGCTTCAGAATCACTCTATGGAGCTTGTGAGGCAATGTACAAGCCAGATATGgtttgcccgctaacaacctcatcatctcttgttatatttctaaatcccgacaatgaaaatgcttaaattaccacatctaggcgttgcagtttggtaggtt
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgaaa