1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCTgtacgttctctttttctgaacagtttgaccagaatttagttatgatttagaatgccacgtttctttatgtaactatgaatttcctgatgatgtgtggggttttacaacatttcag
species | Arabidopsis thaliana |
transcript | AT1G20693.3 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTATCTGATTCT GAGAAAGCTCCTTATGTTGCTAAGGEST: gi|164010533|gb|ES061091.1|ES061091
genomic: GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCTgtacgttctc ... aacatttcagGAGAAAGCTCCTTATGTTGCTAAGG
EST: GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTATCTGATTCT GAGAAAGCTCCTTAEST: gi|125150390|gb|EL183061.1|EL183061
genomic: GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCTgtacgttctc ... aacatttcagGAGAAAGCTCCTTA
EST: GCTGGAGACAAGTGGAAGTCCTTGTCTGTATTCT GAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGAATATGAEST: gi|163969828|gb|ES148976.1|ES148976
genomic: GCTGGAGACAAGTGGAAGTCCTTGTCTG-ATTCTgtacgttctc ... aacatttcagGAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGAATATGA
EST: GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTATCTGATTCT GAGAAAGCTCCTTATGTTGCTAAGEST: gi|164237972|gb|ES129256.1|ES129256
genomic: GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCTgtacgttctc ... aacatttcagGAGAAAGCTCCTTATGTTGCTAAG
EST: GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTATCTGATTCT GAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGAEST: gi|116400368|gb|EG442960.1|EG442960
genomic: GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCTgtacgttctc ... aacatttcagGAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGA
EST: GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCT GAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGAATATGAGEST: gi|125299616|gb|EL313701.1|EL313701
genomic: GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCTgtacgttctc ... aacatttcagGAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGAATATGAG
EST: TTGTCTGATTCT GAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGAATATGAGEST: gi|164194508|gb|ES167794.1|ES167794
genomic: TTGTCTGATTCTgtacgttctc ... aacatttcagGAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGAATATGAG
EST: TGCTGGAGACAAGTGGAAGTCCTTATCTGATTCT GAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGAAATATGA
genomic: TGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCTgtacgttctc ... aacatttcagGAGAAAGCTCCTTATGTTGCTAAGGCTGAGAAACGCAAGGTTGAA-TATGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGGAAAAGCTGCTGGAGACAAGTGGAAGTCCTTGTCTGATTCTgtacgttctctttttctgaacagtttgaccagaatttagttatgatttagaatgccacgtttctttatgtaactatgaatttcctgatgatgtgtggggttttacaacatttcag
- - - AAGCTG
- - - - AGCTGC
- - - - GCTGCT
- - - - - - GCTGGA
- - - - - - - TGGAGA
- - - - - - - - - - - AGTGGA
- - - - - - - - - - - - TGGAAG