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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTTCACCGTATGTTTATCATCAATGCCGGTTCTGGTTTTAAGCTACTTTGGGGCACGGTGAAATCGTTTCTTGATCCAAAGACTGTCTCCAAAATACATgtaacttagccgtggtttttatgcatccatttttacactttattgtatagaactaaactgtattaatgtgatctgaatag

Basic information

species Arabidopsis thaliana
transcript AT1G19650.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA14G07850.1 (Glycine max), 5'ss of exon 6
ACTTCACCGTATGTTTATCATCAATGCCGGTTCTGGTTTTAAGCTACTTTGGGGCACGGTGAAATCGTTTCTTGATCCAAAGACTGTCTCCAAAATACATgta------acttagccgtggtttttatgcatccatttttacactttattgtatagaactaaactg--tat-taatgtgatctgaatag----------------------------------------------
| |    || |||||||| |||||||| ||| | ||||||||||| ||||||  |||||||||||| ||||||||||| || |||   || || ||| ||||       | |||   |   ||||  |   ||  ||||     ||||| |  |   | |||| |   ||| |  |    | |  | ||                                              
ATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACGGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATgtgcgtgccaattatttgatcttttattctttctgttttagagttttataggctttcaataaaataattatcttttacagtttacagagataatctgttggtatagtattgattgatacttcaatgttccattag

upper sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA04G03230.1 (Glycine max), 5'ss of exon 5
ACTTCACCGTATGTTTATCATCAATGCCGGTTCTGGTTTTAAGCTACTTTGGGGCACGGTGAAATCGTTTCTTGATCCAAAGACTGTCTCCAAAATACATgta------acttagccgtggtttttatgcatccatttttacactttattgtatagaactaaactgtattaatgtgatctgaatag-----------------------------------------------
|||   ||  ||||||||||| ||||| ||| ||||||||||| |||| |||  |||||||||| | ||||||||||| || |||   || || || ||||||      | ||       ||| || |  ||   ||| ||   ||   |  |   || ||   | |||   | ||    | | |                                                
ACTCTGCCAAATGTTTATCATTAATGCTGGTCCTGGTTTTAAGATACTCTGGAACACGGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATgtatgtgttaatttttttgagttattgtttatagttttataggattccattgaagtaattaccttctatagttttggctcggagataatttataggtataggattaattgatacttgaatgttgtttcattag

upper sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G37150.1 (Glycine max), 5'ss of exon 6
ACTTCACCGTATGTTTATCATCAATGCCGGTTCTGGTTTTAAGCTACTTTGGGGCACGGTGAAATCGTTTCTTGATCCAAAGACTGTCTCCAAAATACATgta---------------acttagccgtggtttttat--gcatccattt------ttacactttattgtatagaactaaactgtattaatgtgatctgaatag------------------------
| |    || |||||||| |||||||| ||| | ||||||||||| ||||||  ||| |||||||| ||||||||||| || |||   || || ||| |||||               |  |     || |||||||  || | || |       | |  ||||   || || |   | | | | ||  | |  | | |||                          
ATTATGTCGAATGTTTATAATCAATGCTGGTCCCGGTTTTAAGCTGCTTTGGAACACAGTGAAATCATTTCTTGATCCCAAAACTACTTCAAAGATAAATgtatgtgtcaattatttgatctgtttttgatttttataggctttcaatgaaataatcatgcttttcagtttacagagataatctgttggtatagtattaattaattgatacttcaatgttccattag

upper sequence: AT1G19650.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA06G03300.1 (Glycine max), 5'ss of exon 6
ACTTCACCGTATGTTTATCATCAATGCCGGTTCTGGTTTTAAGCTACTTTGGGGCACGGTGAAATCGTTTCTTGATCCAAAGACTGTCTCCAAAATACATgta---acttagccgtggtttttatgcatccatttttaca---ctttattgtatagaactaaactgtattaatgtgatctgaatag---------------------------------------------
|||   ||  ||||||||||| ||||| ||| ||||||||||| | || |||  |||||||||| | ||||||||||| || |||   || || || ||||||     | |    | |   |  ||  |  | ||||| |    |  |||| |   || ||   | |||   | || | || | |                                              
ACTCTGCCAAATGTTTATCATTAATGCTGGTCCTGGTTTTAAGATGCTCTGGAACACGGTGAAAACATTTCTTGATCCCAAAACTACTTCAAAGATTCATgtatgtgataattttttgagctagtgtctatagttttaaaggattccattgaa-gtaattaccttctatagttttggtgtggagataatttataggtataggattaatgtacttgaatgttgttccattag

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86088306|gb|DR384065.1|DR384065
EST:     GGGGCACGGTGAAATCGTTTCTTGATCCAAAGACTGTCTCCAAAATACAT                         GTCCTTGGGAACAAGTACCAGAACAAATTACTTGAGATGATTGATGCAAG
genomic: GGGGCACGGTGAAATCGTTTCTTGATCCAAAGACTGTCTCCAAAATACATgtaacttagc ... atctgaatagGTCCTTGGGAACAAGTACCAGAACAAATTACTTGAGATGATTGATGCAAG