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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCCAAAATGGGGCCACTTTTGTCATTGTAGATAAAACCACAAATCCAAGGGATGGTGCAACAGCTTTGCTAATTCAAGgtaattttgcatgacgtttcttggattaaaaattccgtcccaattcacaagggggagtatgcaaaagaaagactttctaatcatctctgcataaaactttcag

Basic information

species Arabidopsis thaliana
transcript AT1G19100.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G19100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA04G35870.1 (Glycine max), 5'ss of exon 5
ATCCAAAATGGGGCCACTTTTGTCATTGTAGATAAAACCACAAATCCAAGGGATGGTGCAACAGCTTTGCTAATTCAAGgtaattttgcatgacgtttcttggattaaaaat-tccgtcccaattcacaaggggg-----agtatgcaaaagaaagactttctaatcat-ctctgcataaaactttcag-----------------------------------
|||||||||||||| || ||||||||||||||||||||  ||||||||||||||||     |||| ||| | |||||||||| | |||| |   |   ||   ||  || || |  |  ||||||   |  | ||     | |  |       ||   ||  || |    ||    |      ||  |                                    
ATCCAAAATGGGGCTACCTTTGTCATTGTAGATAAAACTTCAAATCCAAGGGATGGAAATCCAGCATTGTTGATTCAAGgta-tattgcttc-tggaactcatatagaacatatttgcaccaatttttatcgtggttttaaattcgtggcctgaatcgttcatatttgcactggatacggtgattctaattgttttgatttgatgctgacacttgggcaattag

upper sequence: AT1G19100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA17G09550.1 (Glycine max), 5'ss of exon 4
ATCCAAAATGGGGCCACTTTTGTCATTGTAGATAAAACCACAAATCCAAGGGATGGTGCAACAGCTTTGCTAATTCAAGgta-attttgcatgacgtttcttgg---------attaaaaattc--cgtcccaatt------cacaagggggagtatgcaaaagaaagactttctaatcatctc-tgcataaaactttcag---------------------------------
|||||||||||||| ||||||||| ||||||||||||    ||||||||  |||||     |||| ||| | |||  ||||| |||    |||    |     |          || | | |||  |||   || |      | |        ||||    |      | ||  | ||  | |  |   ||| | | | |                                  
ATCCAAAATGGGGCTACTTTTGTCTTTGTAGATAAAATTTTAAATCCAAAAGATGGAAGTCCAGCGTTGTTGATTAGAGgtatattgcttatggtactagccagtagtaggaagttgatagttcatcgttttaacttcctacctctgaatcttgtatcttcattctgaatttgatgattttataatatttaatattcttattcttttgatattgttctgatacgtgcaaaacag

upper sequence: AT1G19100.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv17s0000g08750.t01 (Vitis vinifera), 5'ss of exon 4
ATCCAAAATGGGGCCACTTTTGTCATTGTAGATAAAACCACAAATCCAAGGGATGGTGCAACAGCTTTGCTAATTCAAGgtaat--tttgcatgacgtttcttggat-taaaaattcc-------gtcccaattcacaa--gggggagtatgcaaaagaaagactttctaatcat-ctctgcataaaactttcag------------------------------------------------------
|| |||||||||||||| ||||| ||||||||||||||| |||||||||| |||||     |||| ||| |||||||||||| |  |||   |     || ||  || || | |||           ||  ||| ||||  ||  |||  |    ||  |  | |||    || | |||    ||||  | | |                                                       
ATTCAAAATGGGGCCACCTTTGTAATTGTAGATAAAACCTCAAATCCAAGAGATGGAAGTCCAGCATTGTTAATTCAAGgtattcatttatttatttatttttatatatatatatttttatatttaaccttattaacaacaggaagagggtttttaaatattattttggtgtctttctcattgtaaatttcttaatcaaaagaaattttatccaactcgtgttcttcatgacctatcttccccaattag