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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTTACGATGATTTAGATTTGCCCTTTGGTAAACTACGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGGgtacaatgcttttcactctctatctggcctgttgatgttttcatttgtgttttaacttttaagtattgtcttactttttacttaagaagcaatgtggatggataatagtttgcggtttcactatcaaatcatagagaaactctacaagaaaacatgatgggttgttcttttacttgcag

Basic information

species Arabidopsis thaliana
transcript AT1G18440.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G18440.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv17s0000g03980.t01 (Vitis vinifera), 5'ss of exon 5
GTTTACGATGATTTAGATTTGCCCTTTGGTAAACTACGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGGgtacaatgcttttcactctctatctggcctgttgatgttttcatttgtgttttaacttttaagtattgtcttactt--tttacttaagaagcaatgtggatggataatagtttgcggtttcactatcaaatcatagagaaactctacaagaaaacatgatgggttgttcttttacttgcag
 |||  ||||| |||||| |||| |||   ||||||||  |||||||||||||||| || ||||| |||||||||||     | |     | | |   | |  | ||  | || |      ||||  | |      ||||  | | |||   ||| |||| | |  |||  | |||  ||||                                                                         
ATTTTTGATGACTTAGATCTGCCTTTTTCAAAACTACGGCTATTGCCAAAAGGTGGACATGGAGGACACAATGGgtatgtaccatgatgatgtgt---tagtttctt--ttttcttgacaatgttgcagc-----ggtatcttatcactgaattttcttatgga-taataagaatgtctaatcta----------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|47829868|gb|CK119552.1|CK119552
EST:     TTTGGTAAACTACGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGG                         GATGAGAAGTATTATAGACCGCCTCAAAGGTAGCCGTGATTTTCCTCGACT
genomic: TTTGGTAAACTACGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGGgtacaatgct ... ttacttgcagGATGAGAAGTATTATAGACCGCCTCAAAGGTAGCCGTGATTTTCCTCGACT
EST: gi|19879108|gb|AU239939.1|AU239939
EST:     TTTGGTAAACTACGTTTATTGCCAAAAGGNGGGCACGGAGGCCACAATGG                         GATGAGAAGTATTATAGACC
genomic: TTTGGTAAACTACGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGGgtacaatgct ... ttacttgcagGATGAGAAGTATTATAGACC
EST: gi|47828134|gb|CK117818.1|CK117818
EST:     TTTGGTAAACTACGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGG                         GATGAGAAGTATTATAGACCGCCTCAAAGGTAGCCGTGATTTTCCTCGACT
genomic: TTTGGTAAACTACGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGGgtacaatgct ... ttacttgcagGATGAGAAGTATTATAGACCGCCTCAAAGGTAGCCGTGATTTTCCTCGACT
EST: gi|47831407|gb|CK121091.1|CK121091
EST:     TTTGGTAAACTACGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGG                         GATGAGAAGTATTATAGACCGCCTCAAAGGTAGCCGTGATTTTCCTCGACT
genomic: TTTGGTAAACTACGTTTATTGCCAAAAGGTGGTCACGGAGGCCACAATGGgtacaatgct ... ttacttgcagGATGAGAAGTATTATAGACCGCCTCAAAGGTAGCCGTGATTTTCCTCGACT