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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATTATGTAGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAAgtaagattctttttcaccaaacccaactactcttgctatttctccctaccaggaaaatgcttctagttttctattttgtagaatattgttgtgtggttctatagtgttgttgagaagaccagccatctcaagctaagtctactcttgttatatttcag

Basic information

species Arabidopsis thaliana
transcript AT1G18150.3
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA08G05700.1 (Glycine max), 5'ss of exon 4
GATTATGTAGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAAgtaagattctttttcaccaaacccaactactcttgctatttctccctaccaggaaaatgcttctagttttctattttgtagaatat-tgttgtgt-ggttctatagtgttgttgagaagaccagccatctcaagctaagtctactcttgttatatttcag
|||||||| || ||||||||||||||||| |||||| | ||||| || |||||||| |||||||| ||||| ||      | | | ||  |||||   |   |       | | || ||    ||  ||  | | ||| |  ||   |||  | |    | |||    || |||                                              
GATTATGTTGCAACTCGGTGGTATCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAAgtaagtttcttcttttttttaac-atcttttcttgggttgaatataatttaagcaattgaacata-cttggtgtattgaaatatgcatgtaattttaaatttatttcctttttgcag-------------------------------------------

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G11470.1 (Glycine max), 5'ss of exon 4
GATTATGTAGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAAgtaagattctttttcaccaaacccaactactcttgctatttctccctaccaggaaaatgcttctagttttctattttgtagaatattgttgtgtggttctatagtgttgttgagaagaccagccatctcaagctaagtctactcttgttatatttcag
|| ||||| || ||||||||||||||||| |||||||| ||||| || |||||||| |||||||| || || |   |    | |   | ||    |  |||          |  | |||  ||||   |  ||||       || |  || ||      ||                                                         
GACTATGTTGCAACTCGGTGGTATCGTGCACCTGAACTATGTGGTTCTTTTTTCTCAAAAgtaagctttttgtattctttgcact-ttgcttcctcccttttctgtagtttgtgacatgtatctaaactgttattgctccacatgtgattatgcttaatta---------------------------------------------------------

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA09G30790.1 (Glycine max), 5'ss of exon 4
GATTATGTAGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAAgtaagattctttttcaccaaacccaactactcttgctatttctccctaccaggaaaatgcttctagttttctattttgtagaatattgttgtgtggttctatagtgttgttgagaagaccagccatctcaagctaagtctactcttgttatatttcag
|| ||||| || ||||||||||||||||| |||||||| ||||| || |||||||| |||||||| || || |   |    | |   | || |  |  |||          |  | |||  ||||   |  ||||       || |  || ||      ||                                                         
GACTATGTTGCAACTCGGTGGTATCGTGCACCTGAACTTTGTGGTTCTTTTTTCTCAAAAgtaagctttttgtattctttgcact-ttgctttcccccttttctgtagtttgtgacatgtatctaaactgttattgctccatatgtgattatgcttaatta---------------------------------------------------------

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA05G33980.1 (Glycine max), 5'ss of exon 4
GATTATGTAGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAAgtaagattctttttcaccaaacccaactactc--ttgctatttctccctaccag--gaaaatgcttctagttttctattttgtagaatattgttgtgtggttctatagtgttgttgagaagaccagccatctcaagctaagtctactcttgttatatttcag
|| ||||| || ||||||||||| ||||| |||||| | ||||| || |||||||| |||||||| |||||||     || |  |  | ||    | |||| |      | ||   ||| ||||||    | ||  ||| || |    ||| |    |  ||   |  | |||  |                                              
GACTATGTTGCAACTCGGTGGTACCGTGCACCTGAATTATGTGGTTCTTTTTTCTCAAAAgtaagcttcttttcttttaa-catattttcttgggttctatataatataagcaattgaacatgcttgatatattgaattatgcatgcaattttaaatttatttcct--ttttgcag----------------------------------------------

upper sequence: AT1G18150.3 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv01s0011g04920.t01 (Vitis vinifera), 5'ss of exon 4
GATTATGTAGCTACTCGGTGGTATCGTGCCCCTGAACTCTGTGGATCGTTTTTCTCCAAAgtaagattctttttcaccaaacccaactactcttgctatttctccctaccaggaaaatgcttctagttttctattttgtagaatattgttgtgtggttctatagtgttgttgagaagaccagccatctcaagctaagtctactcttgttatatttcag
||||| || || ||| | ||||||||||| |||||||||||||| |  ||||||||||||||||| || | |      || |        |  ||  | ||     |  |||    ||   |||   | | | ||||     |  ||||||  |  | || |  | |  ||                                               
GATTACGTGGCAACTAGATGGTATCGTGCTCCTGAACTCTGTGGTTGCTTTTTCTCCAAAgtaagcttatgt------aatctagggcttttgtgacagtttgtggtttcagttgcatttgtctgtatgtatctttt-----actttgttggattatcctcttttatattt-----------------------------------------------