1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AGTTACTAATGGATTACCTGCTGATAAAGGGCATGACTACCTGAGCAAGGACTTTTCTTTCCCGCCAGGAGGCATTCCATCTCTGCGTTTGCCTGTGGTAgttgtactcgacgcaacttttttttactttttgtttgggtgtcaaatgaagtgagttttaatttcaggattctgaaaagtaaatgcgtatagatattaag...
species | Arabidopsis thaliana |
transcript | AT1G17720.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: ACTTTTCTTTCCCGCCAGGAGGCATTCCATCTCTGCGTTTGCCTGTGGTA GTTACCAGCCAGGAGACTAACCTTGTGGCTAGATGCCGAAGAGTGTATGCCEST: gi|116411283|gb|EG453875.1|EG453875
genomic: ACTTTTCTTTCCCGCCAGGAGGCATTCCATCTCTGCGTTTGCCTGTGGTAgttgtactcg ... gcatatatagGTTACCAGCCAGGAGACTAACCTTGTGGCTAGATGCCGAAGAGTGTATGCC
EST: ACTTTTCTTTCCCGCCAGGAGGCATTCCATCTCTGCGTTTGCCTGTGGTA GTTACCAGCCAGGAGEST: gi|116432328|gb|EG474920.1|EG474920
genomic: ACTTTTCTTTCCCGCCAGGAGGCATTCCATCTCTGCGTTTGCCTGTGGTAgttgtactcg ... gcatatatagGTTACCAGCCAGGAG
EST: ACTTTTCTTTCCCGCCAGGAGGCATTCCATCTCTGCGTTTGCCTGTGGTA GTTACCAGCCAGGAGACTAACCTTGTGGCTAGATGCCGAAGAGTGTATGCC
genomic: ACTTTTCTTTCCCGCCAGGAGGCATTCCATCTCTGCGTTTGCCTGTGGTAgttgtactcg ... gcatatatagGTTACCAGCCAGGAGACTAACCTTGTGGCTAGATGCCGAAGAGTGTATGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTACTAATGGATTACCTGCTGATAAAGGGCATGACTACCTGAGCAAGGACTTTTCTTTCCCGCCAGGAGGCATTCCATCTCTGCGTTTGCCTGTGGTAgttgtactcgacgcaacttttttttactttttgtttgggtgtcaaatgaagtgagttttaatttcaggattctgaaaagtaaatgcgtatagatattaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caaatgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gaaaagta