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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAGTTTTTTCGGGGAACCTATCTGTAGACCTTAGCGAAGGATCAAAATGGAACATCAGTCGAAGTGGTTTCTGTGGAATGCGCTCAAAAAAGgtgaacaacacagagctttcatttatcttactaaccattcttattcaaaacatattttctgcatgtcagtctttgtttgaagaaaagaaggaaaatgggttactatatcttagtcctggttttgtaaacgagagactttttgagtcagcttactattgcaactaattctagcatcctctgcttttctag

Basic information

species Arabidopsis thaliana
transcript AT1G17350.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G17350.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA16G01410.2 (Glycine max), 5'ss of exon 3
--------GAGTTTTTTCGGGGAACCTATCTGTAGACCTTAGCGAAGGATCAAAATGGAACATCAGTCGAAGTGGTTTCTGTGGAATGCGCTCAAAAAAGgtgaacaacacagagctttcatttatcttactaaccattcttattcaa--aacatattttctgcatgtcagtctttgtttgaagaaaagaaggaaaatgggttactatatcttagtcctggttttgtaaacgagagactttttgagtcagcttactattgcaactaattctagcatcctctgcttttctag
        || | || || |||||||| ||| | ||  |    ||||| || ||||||||||||| ||||||||| |||||||||||||||||||||||||               |||| |||     || | |   |   ||| ||  ||  |  ||  ||  ||      |||||||    | |  || |||  |   |||                                                                                       
AACTTCTGGAATCTTCTCCGGGAACCTTTCTCTGGATGTCTCTGAAGGCTCTAAATGGAACATCACTCGAAGTGGCTTCTGTGGAATGCGCTCAAAAAAGgctggttttttt---ttttcctttcaaaaacaagcatattggatttaattaatgtgattattg-gtgcttaattttgttttctaacattaaagaatttaa-ttat--------------------------------------------------------------------------------------

upper sequence: AT1G17350.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA07G04830.1 (Glycine max), 5'ss of exon 3
--------GAGTTTTTTCGGGGAACCTATCTGTAGACCTTAGCGAAGGATCAAAATGGAACATCAGTCGAAGTGGTTTCTGTGGAATGCGCTCAAAAAAGgtgaacaacacagagctttcatttatcttactaaccattcttattcaaaacatattttctgcatgtcagtctttgtttgaagaaaagaaggaaaatgggttactatatcttagtcctggttttgtaaacgagagactttttgagtcagcttactattgcaactaattctagcatcctctgcttttctag
        || | || || |||||||| ||| | ||  |    || || || ||||||||||||| ||| ||||| ||||||||||||||||||||||||||            |||||  |  |       || ||  | ||||  |   |  |  | ||  | |  ||  || |||  | | |  || |||  |   |||  || |  |  |  ||                                                                       
AACTTCTGGAATCTTCTCCGGGAACCTTTCTCTGGATGTCTCTGAGGGCTCTAAATGGAACATCACTCGGAGTGGCTTCTGTGGAATGCGCTCAAAAAAGgtt-----------gcttttttgcaa------aaacaagcatattggatttaattaatgtgattattggtgcttttttttaaatattaaagaatttaa-ttataatgtactgatagtg-----------------------------------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116443699|gb|EG486291.1|EG486291
EST:     CAAAATGGAACATCAGTCGAAGTGGTTTCTGTGGAATGCGCTCAAAAAAG                         TTTGATGGCTTCATTGATCTCGATGGGTATGATGCAATAGCCCTGAGGATC
genomic: CAAAATGGAACATCAGTCGAAGTGGTTTCTGTGGAATGCGCTCAAAAAAGgtgaacaaca ... gcttttctagTTTGATGGCTTCATTGATCTCGATGGGTATGATGCAATAGCCCTGAGGATC
EST: gi|116443700|gb|EG486292.1|EG486292
EST:     CAAAATGGAACATCAGTCGAAGTGGTTTCTGTGGAATGCGCTCAAAAAAG                         TTTGATGGCTTCATTGATCTCGATGGGTATGATGCAATAGCCCTGAGGATC
genomic: CAAAATGGAACATCAGTCGAAGTGGTTTCTGTGGAATGCGCTCAAAAAAGgtgaacaaca ... gcttttctagTTTGATGGCTTCATTGATCTCGATGGGTATGATGCAATAGCCCTGAGGATC