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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGgtaggttctgcttcttctgattctttcttttttctctttgaacatctatttttctctgtgcactgcgttagcatttatgatgtggttatttccag

Basic information

species Arabidopsis thaliana
transcript AT1G15730.1
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15730.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv09s0002g08260.t01 (Vitis vinifera), 5'ss of exon 5
ACTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGgtaggttc--tgcttcttctgattctttcttttttctctttgaacatctatttttctctgtgcactgcgttagcatttatgatgtggttatttccag
| |||||||||||||||||||||| | |||||| || | |||||||||||||| ||| |  ||||||||       |  ||||  | | | | |   | |  ||||   ||||     |  | |  |   |  | | | |     |||
ATTGATCTTGTTGGTGAGCCAGAAATTGCTTCATTGGTCCAGCGGATAAAGgttggtaccttgcttcttgcttggatggctttcatttttcttattgtttcgttttggatgtgttggactgtggtgtg-gtacttttgctgaaagcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|164116525|gb|ES191812.1|ES191812
EST:     GTGATGCAGCGGATAAAG                         ACCATAAACAGCATGGCTCACATGAAGCGGACAAAGTATGGGAAGGTTGAC
genomic: GTGATGCAGCGGATAAAGgtaggttctg ... ttatttccagACCATAAACAGCATGGCTCACATGAAGCGGACAAAGTATGGGAAGGTTGAC
EST: gi|116474225|gb|EG516817.1|EG516817
EST:     CTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAG                         ACCATAAACAGCATGGCTCACATGAAGCGGACAAAGTATGGGAAGGTTGAC
genomic: CTGATCTTGTTGGTGAGCCAGAACTAGCTTCAGTGATGCAGCGGATAAAGgtaggttctg ... ttatttccagACCATAAACAGCATGGCTCACATGAAGCGGACAAAGTATGGGAAGGTTGAC