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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagttacttgaattatgttattttgctgtttcatcatatgatatcttctaaag

Basic information

species Arabidopsis thaliana
transcript AT1G15120.2
intron # 5
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G15120.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: LOC_Os11g06340.1 (Oryza sativa), 5'ss of exon 3
GCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagt---tacttgaat-tatgttattttgc-tgtttc--atcatatga-tatcttctaaag-------------------------------------------------------------
   || ||||||||| |  |    |||||| |||| || || || |||||||| || ||||| ||||| |||  ||||||||||||||||||||||   | | ||  | | ||  || | || | | |   | || |  | |   || |  ||                                                             
AAGTGCGTCAAGAGAGTGGAGAAGGATGATACTGGGCATAAACACTGCACTGGGCAATATTTCGACTATTGGTCATGCATTGACAAATGTgtaagtatctgcatgtgtgtgtgcaatatcgcatatctggaaccaaacaaatgatttatggagaagctctgcatatataagctaggttaataacatattttctgtggggtgcatctgcaggtag

upper sequence: AT1G15120.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G122039_T06 (Zea mays), 5'ss of exon 3
GCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagttacttgaattatgtt---attttgctgtttcatcatatgatatcttctaaag------------------------------
  ||| ||||||||| |  |   ||||||| |||| ||||| || |||||||| || || ||||| ||||||  |||||| ||||||||||||||| ||| |      | |   | ||| | ||||     | | |   |    ||                                
AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagt-actcgttcccagcttgcactttaccgtttgtcattgtcaagccagagaagaaccaattttttatggaacatgcatctgcag

upper sequence: AT1G15120.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G122039_T01 (Zea mays), 5'ss of exon 2
----------GCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagttacttgaattatgtt---attttgctgtttcatcatatgatatcttctaaag------------------------------
            ||| ||||||||| |  |   ||||||| |||| ||||| || |||||||| || || ||||| ||||||  |||||| ||||||||||||||| ||| |      | |   | ||| | ||||     | | |   |    ||                                
CTGTTATCAGAAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagt-actcgttcccagcttgcactttaccgtttgtcattgtcaagccagagaagaaccaattttttatggaacatgcatctgcag

upper sequence: AT1G15120.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G122039_T07 (Zea mays), 5'ss of exon 3
GCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagttacttgaattatgtt---attttgctgtttcatcatatgatatcttctaaag----------------------------------
  ||| ||||||||| |  |   ||||||| |||| ||||| || |||||||| || || ||||| ||||||  |||||| ||||||||||||||| ||| |      | |   | ||| | ||||     | | |   |    ||                                    
AAATGCGTCAAGAGAGTTGAGAATGATGATACTGGTCACAAACACTGCACTGGGCAATACTTTGATTACTGGTCATGCATCGACAAATGTgtaagt-actcgttcccagcttgcactttaccgtttgtcattgtcaagccagagaagaaccaattttttatggaacatgcatctgcaggtag

upper sequence: AT1G15120.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GLYMA15G05620.1 (Glycine max), 5'ss of exon 3
GCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaag--ttacttgaattatgttattttgctgtttcatcatatgatat-cttctaaag-----------------------
|| ||  | || || || || |||||||||||||| || || || |||||||| || |||||||| || |||   || |||||||||||||||||  ||| ||      |  ||  |     |    |||| || | | ||| |  |                        
GCGTGCATTAAAAGGATACATGGTGATGATTCTGGGCAGAAACACTGCACTGGACAATATTTTGATTATTGGTCTTGTATTGACAAATGTgtaagtattattttttagttagtaaataagcatcgagtcatttggtttgcttgtgtataacatcataatcctgtaatgcag

upper sequence: AT1G15120.2 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: PP1S491_11V6.1 (Physcomitrella patens), 5'ss of exon 3
GCATGTGTCAAGAGAATCCAAGGTGATGATTCTGGCCACAAGCATTGCACTGGCCAGTATTTTGACTACTGGCAATGCATTGACAAATGTgtaagttacttgaattatgttattttgctgtttcatcatatg-atatcttctaaag--------------------------------------------
||||| || ||| | ||  | |  |||||   ||| || ||||||||||||||||||||||| ||||| |||   ||||||||  |||||||||||   |  |    |   || ||  | ||  |   | |   ||   |  | |                                             
GCATGCGTGAAGCGCATTGAGGAGGATGAGAATGGTCAAAAGCATTGCACTGGCCAGTATTTCGACTATTGGGGCTGCATTGATCAATGTgtaagtggttctaccatttccatcttcattttgtacagtgtctgtacaatgcataagtctctttcacatgatttaagctttaagacattgaatgaagcaa