Sequence
atgc intronic sequence ATGC exonic sequenceTCAAAACTCTGTTCGAATGCATCTACCATGTGGAGCTTTAGCTGGTTTATTTGGCCAGACCATCACTTACCCATTGGACGTTGTTAGGAGACAAATGCAGgtaaaaaaacaaacaaaccagaaacaagattcaaactatgcaccatttcagaactcagaacatattgggcgtttcgtgtgaccacag
Basic information
species | Arabidopsis thaliana |
transcript | AT1G14560.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: AT1G14560.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: GRMZM2G420119_T01 (Zea mays), 5'ss of exon 5
TCAAAACTCTGTTCGAATGCATCTACCATGTGGAGCTTTAGCTGGTTTATTTGGCCAGACCATCACTTACCCATTGGACGTTGTTAGGAGACAAATGCAGgtaaaaaaacaaacaaaccagaaacaagattcaaactatgcaccatttcagaactcagaacatattgggcgtttcgtgtgaccacag-----------
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CAAGGATTCTGTTATACTGAAGCTCTCTTGTGGAGCTTTAGCTGGTCTATTTGGACAAACCCTCACTTATCCACTGGATGTTGTCCGGAGACAAATGCAGgtgcaatt-cttgtattccatgcactgatactctgttaaatctcatttt-gactgcgattcctgtttgttgactactcacaagactttctgccttcag
upper sequence: AT1G14560.1 (Arabidopsis thaliana), 5'ss of exon 5
lower sequence: Vv04s0008g01060.t01 (Vitis vinifera), 5'ss of exon 5
TCAAAACTCTGTTCGAATGCATCTACCATGTGGAGCTTTAGCTGGTTTATTTGGCCAGACCATCACTTACCCATTGGACGTTGTTAGGAGACAAATGCAGgtaaaaaaacaaacaaaccagaaacaagattcaaactatgcaccatttcagaact--cagaacatattgggcgtttcgtgtgaccacag-----------
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CCAAAAGTCTATTGCAATGCGTCTGTCATGTGGGGCATTAGCTGGCCTGTTAGGGCAGACCTTCACATACCCATTGGATGTTGTTAGGAGACAGATGCAGgtattcctcaatttactccttctatgcctttggtgggttgtaacgtttttttccctcctggtcttattaagcatgaattctttctgtggagtaattaagaMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|125277811|gb|EL291896.1|EL291896EST: ACCATCACTTACCCATTGGACGTTGTTAGGAGACAAATGCAG GTAGAGAATCTGCAACCTATGACGAGTGAAGGCAACAACAAGCGTTACAAG
genomic: ACCATCACTTACCCATTGGACGTTGTTAGGAGACAAATGCAGgtaaaaaaac ... gtgaccacagGTAGAGAATCTGCAACCTATGACGAGTGAAGGCAACAACAAGCGTTACAAG
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
TCAAAACTCTGTTCGAATGCATCTACCATGTGGAGCTTTAGCTGGTTTATTTGGCCAGACCATCACTTACCCATTGGACGTTGTTAGGAGACAAATGCAGgtaaaaaaacaaacaaaccagaaacaagattcaaactatgcaccatttcagaactcagaacatattgggcgtttcgtgtgaccacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA